| Producing polished prokaryotic pangenomes with the Panaroo pipeline G Tonkin-Hill, N MacAlasdair, C Ruis, A Weimann, G Horesh, JA Lees, ... Genome biology 21, 1-21, 2020 | 468 | 2020 |
| Fast and flexible bacterial genomic epidemiology with PopPUNK JA Lees, SR Harris, G Tonkin-Hill, RA Gladstone, SW Lo, JN Weiser, ... Genome research 29 (2), 304-316, 2019 | 268 | 2019 |
| A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large cps Fragment from an Oral Streptococcus F Ganaie, JS Saad, L McGee, AJ van Tonder, SD Bentley, SW Lo, ... MBio 11 (3), 10.1128/mbio. 00937-20, 2020 | 244 | 2020 |
| Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole … SW Lo, RA Gladstone, AJ Van Tonder, JA Lees, M Du Plessis, R Benisty, ... The Lancet Infectious Diseases 19 (7), 759-769, 2019 | 193 | 2019 |
| Strain features and distributions in pneumococci from children with invasive disease before and after 13-valent conjugate vaccine implementation in the USA BJ Metcalf, RE Gertz Jr, RA Gladstone, H Walker, LK Sherwood, ... Clinical Microbiology and Infection 22 (1), 60. e9-60. e29, 2016 | 193 | 2016 |
| International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact RA Gladstone, SW Lo, JA Lees, NJ Croucher, AJ Van Tonder, J Corander, ... EBioMedicine 43, 338-346, 2019 | 162 | 2019 |
| Five winters of pneumococcal serotype replacement in UK carriage following PCV introduction RA Gladstone, JM Jefferies, AS Tocheva, KR Beard, D Garley, WW Chong, ... Vaccine 33 (17), 2015 | 144 | 2015 |
| Current methods for capsular typing of Streptococcus pneumoniae E Jauneikaite, AS Tocheva, JMC Jefferies, RA Gladstone, SN Faust, ... Journal of microbiological methods 113, 41-49, 2015 | 96 | 2015 |
| SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data L Epping, AJ Van Tonder, RA Gladstone, ... Microbial genomics 4 (7), e000186, 2018 | 95 | 2018 |
| Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci T Azarian, PK Mitchell, M Georgieva, CM Thompson, A Ghouila, ... PLoS pathogens 14 (11), e1007438, 2018 | 93 | 2018 |
| Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis JA Lees, B Ferwerda, PHC Kremer, NE Wheeler, MV Serón, NJ Croucher, ... Nature communications 10 (1), 2176, 2019 | 91 | 2019 |
| The rise and fall of pneumococcal serotypes carried in the PCV era VT Devine, DW Cleary, JMC Jefferies, R Anderson, DE Morris, AC Tuck, ... Vaccine 35 (9), 1293-1298, 2017 | 91 | 2017 |
| Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era AK Pöntinen, J Top, S Arredondo-Alonso, G Tonkin-Hill, AR Freitas, ... Nature communications 12 (1), 1523, 2021 | 90 | 2021 |
| Continued control of pneumococcal disease in the UK–the impact of vaccination RA Gladstone, JM Jefferies, SN Faust, SC Clarke Journal of medical microbiology 60 (1), 1-8, 2011 | 88 | 2011 |
| Effect on nasopharyngeal pneumococcal carriage of replacing PCV7 with PCV13 in the Expanded Programme of Immunization in The Gambia A Roca, A Bojang, C Bottomley, RA Gladstone, JU Adetifa, U Egere, ... Vaccine 33 (51), 7144-7151, 2015 | 70 | 2015 |
| Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial … RA Gladstone, A McNally, AK Pöntinen, G Tonkin-Hill, JA Lees, K Skytén, ... The Lancet Microbe 2 (7), e331-e341, 2021 | 52 | 2021 |
| Persistence of nasopharyngeal pneumococcal vaccine serotypes and increase of nonvaccine serotypes among vaccinated infants and their mothers 5 years after introduction of … E Usuf, C Bottomley, E Bojang, I Cox, A Bojang, R Gladstone, ... Clinical infectious diseases 68 (9), 1512-1521, 2019 | 44 | 2019 |
| Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation C Chaguza, M Senghore, E Bojang, RA Gladstone, SW Lo, PE Tientcheu, ... Nature communications 11 (1), 3442, 2020 | 42 | 2020 |
| Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi C Chaguza, JE Cornick, CP Andam, RA Gladstone, M Alaerts, P Musicha, ... Vaccine 35 (35), 4594-4602, 2017 | 35 | 2017 |
| Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study SW Lo, K Mellor, R Cohen, AR Alonso, S Belman, N Kumar, PA Hawkins, ... The Lancet Microbe 3 (10), e735-e743, 2022 | 32 | 2022 |
Stephen BentleyWellcome Sanger InstituteVerified email at sanger.ac.uk
