| DeepImageJ: A user-friendly environment to run deep learning models in ImageJ E Gómez-de-Mariscal, C García-López-de-Haro, W Ouyang, L Donati, ... Nature Methods 18 (10), 1192-1195, 2021 | 232 | 2021 |
| The cell tracking challenge: 10 years of objective benchmarking M Maška, V Ulman, P Delgado-Rodriguez, E Gómez-de-Mariscal, ... Nature Methods 20 (7), 1010-1020, 2023 | 120 | 2023 |
| Use of the p-values as a size-dependent function to address practical differences when analyzing large datasets E Gómez-de-Mariscal, V Guerrero, A Sneider, H Jayatilaka, JM Phillip, ... Scientific reports 11 (1), 1-13, 2021 | 89 | 2021 |
| DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches C Spahn, E Gómez-de-Mariscal, RF Laine, PM Pereira, L von Chamier, ... Communications Biology 5 (1), 1-18, 2022 | 75 | 2022 |
| Bioimage model zoo: a community-driven resource for accessible deep learning in bioimage analysis W Ouyang, F Beuttenmueller, E Gómez-de-Mariscal, C Pape, T Burke, ... BioRxiv, 2022.06. 07.495102, 2022 | 70 | 2022 |
| Deep-learning-based segmentation of small extracellular vesicles in transmission electron microscopy images E Gómez-de-Mariscal, M Maška, A Kotrbová, V Pospíchalová, P Matula, ... Scientific reports 9 (1), 13211, 2019 | 58 | 2019 |
| Live-cell imaging in the deep learning era JW Pylvänäinen, E Gómez-de-Mariscal, R Henriques, G Jacquemet Current Opinion in Cell Biology 85, 102271, 2023 | 32 | 2023 |
| Roadmap on deep learning for microscopy G Volpe, C Wählby, L Tian, M Hecht, A Yakimovich, K Monakhova, ... ArXiv, arXiv: 2303.03793 v1, 2023 | 23 | 2023 |
| Small extracellular vesicles promote stiffness-mediated metastasis A Sneider, Y Liu, B Starich, W Du, PR Nair, C Marar, N Faqih, GE Ciotti, ... Cancer research communications 4 (5), 1240-1252, 2024 | 12 | 2024 |
| Association of visual and quantitative heterogeneity of 18F-FDG PET images with treatment response in locally advanced rectal cancer: A feasibility study P Martín-González, E Gómez-de-Mariscal, ME Martino, PM Gordaliza, ... PloS one 15 (11), e0242597, 2020 | 12 | 2020 |
| DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible I Hidalgo-Cenalmor, JW Pylvänäinen, M G. Ferreira, CT Russell, A Saguy, ... Nature methods 21 (6), 925-927, 2024 | 10 | 2024 |
| CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data E Gómez-de-Mariscal, H Grobe, JW Pylvänäinen, L Xénard, R Henriques, ... Plos Biology 22 (8), e3002740, 2024 | 8* | 2024 |
| Harnessing artificial intelligence to reduce phototoxicity in live imaging E Gómez-de-Mariscal, M Del Rosario, JW Pylvänäinen, G Jacquemet, ... Journal of Cell Science 137 (3), 2024 | 8 | 2024 |
| The rise of data‐driven microscopy powered by machine learning L Morgado, E Gómez‐de‐Mariscal, HS Heil, R Henriques Journal of microscopy 295 (2), 85-92, 2024 | 7 | 2024 |
| MLL1 regulates cytokine-driven cell migration and metastasis PR Nair, L Danilova, E Gómez-de-Mariscal, D Kim, R Fan, ... Science Advances 10 (11), eadk0785, 2024 | 7 | 2024 |
| Bioimage data analysis workflows‒advanced components and methods K Miura, N Sladoje Springer Nature, 2022 | 6 | 2022 |
| This Microtubule Does Not Exist: Super‐Resolution Microscopy Image Generation by a Diffusion Model A Saguy, T Nahimov, M Lehrman, E Gómez‐de‐Mariscal, ... Small Methods, 2400672, 2024 | 4 | 2024 |
| Transertion and cell geometry organize the Escherichia coli nucleoid during rapid growth C Spahn, S Middlemiss, E Gómez-de-Mariscal, R Henriques, HB Bode, ... bioRxiv, 2023.10. 16.562172, 2023 | 4 | 2023 |
| EDAM-bioimaging: The ontology of bioimage informatics operations, topics, data, and formats (update 2020) M Kalaš, L Plantard, N Sladoje, J Lindblad, MA Kirschmann, M Jones, ... ELIXIR All Hands 2020, 2020 | 4 | 2020 |
| Building a bioimage analysis workflow using deep learning E Gómez-de-Mariscal, D Franco-Barranco, A Muñoz-Barrutia, ... Bioimage Data Analysis Workflows‒Advanced Components and Methods, 59-88, 2022 | 3 | 2022 |
Arrate Muñoz BarrutiaProfessor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio MarañónVerified email at ing.uc3m.es
