Gregory P Way
Gregory P Way
University of Colorado, Department of Biomedical Informatics
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Oncogenic signaling pathways in the cancer genome atlas
F Sanchez-Vega, M Mina, J Armenia, WK Chatila, A Luna, KC La, ...
Cell 173 (2), 321-337. e10, 2018
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of the Royal Society Interface, 142760, 2018
Genomic and molecular landscape of DNA damage repair deficiency across the cancer genome atlas
TA Knijnenburg, L Wang, MT Zimmermann, N Chambwe, GF Gao, ...
Cell reports 23 (1), 239-254. e6, 2018
Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders
GP Way, CS Greene
Proceedings of the Pacific Symposium on Biocomputing, 80-91, 2018
Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design
JL Rokita, KS Rathi, MF Cardenas, KA Upton, J Jayaseelan, KL Cross, ...
Cell reports 29 (6), 1675-1689. e9, 2019
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
GP Way, F Sanchez-Vega, K La, J Armenia, WK Chatila, A Luna, ...
Cell Reports, 2018
Immune landscapes associated with different glioblastoma molecular subtypes
M Martinez-Lage, TM Lynch, Y Bi, C Cocito, GP Way, S Pal, J Haller, ...
Acta neuropathologica communications 7, 1-12, 2019
A comparison of methodologies to test aggression in zebrafish
GP Way, N Ruhl, JL Snekser, AL Kiesel, SP McRobert
Zebrafish 12 (2), 144-151, 2015
Predicting cell health phenotypes using image-based morphology profiling
GP Way, M Kost-Alimova, T Shibue, WF Harrington, S Gill, F Piccioni, ...
Molecular biology of the cell 32 (9), 995-1005, 2021
Challenges and opportunities in studying the epidemiology of ovarian cancer subtypes
JA Doherty, LC Peres, C Wang, GP Way, CS Greene, JM Schildkraut
Current epidemiology reports 4, 211-220, 2017
Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations
GP Way, M Zietz, V Rubinetti, DS Himmelstein, CS Greene
Genome biology 21, 1-27, 2020
Epigenomic profiling of neuroblastoma cell lines
K Upton, A Modi, K Patel, NM Kendsersky, KL Conkrite, RT Sussman, ...
Scientific data 7 (1), 116, 2020
Morphology and gene expression profiling provide complementary information for mapping cell state
GP Way, T Natoli, A Adeboye, L Litichevskiy, A Yang, X Lu, JC Caicedo, ...
Cell systems 13 (11), 911-923. e9, 2022
Comprehensive cross-population analysis of high-grade serous ovarian cancer supports no more than three subtypes
GP Way, J Rudd, C Wang, H Hamidi, BL Fridley, GE Konecny, EL Goode, ...
G3: Genes, Genomes, Genetics 6 (12), 4097-4103, 2016
Sharing biological data: why, when, and how
SL Wilson, GP Way, W Bittremieux, JP Armache, MA Haendel, ...
FEBS letters 595 (7), 847, 2021
A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma
GP Way, RJ Allaway, SJ Bouley, CE Fadul, Y Sanchez, CS Greene
BMC genomics 18, 1-11, 2017
Sex differences in a shoaling-boldness behavioral syndrome, but no link with aggression
GP Way, AL Kiesel, N Ruhl, JL Snekser, SP McRobert
Behavioural processes 113, 7-12, 2015
Deconvolution of DNA methylation identifies differentially methylated gene regions on 1p36 across breast cancer subtypes
AJ Titus, GP Way, KC Johnson, BC Christensen
Scientific Reports 7 (1), 2017
Bayesian deep learning for single-cell analysis
GP Way, CS Greene
Nature methods 15 (12), 1009-1010, 2018
Integrated phosphoproteomics and transcriptional classifiers reveal hidden RAS signaling dynamics in multiple myeloma
YHT Lin, GP Way, BG Barwick, MC Mariano, M Marcoulis, ID Ferguson, ...
Blood advances 3 (21), 3214-3227, 2019
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