Michael Menden
Michael Menden
Junior Group Leader, Institute of Computational Biology, Helmholtz Zentrum München
Verified email at helmholtz-muenchen.de - Homepage
Title
Cited by
Cited by
Year
A landscape of pharmacogenomic interactions in cancer
F Iorio, TA Knijnenburg, DJ Vis, GR Bignell, MP Menden, M Schubert, ...
Cell 166 (3), 740-754, 2016
8782016
The IntAct molecular interaction database in 2010
B Aranda, P Achuthan, Y Alam-Faruque, I Armean, A Bridge, C Derow, ...
Nucleic acids research 38 (suppl_1), D525-D531, 2010
7422010
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
5202014
Machine learning prediction of cancer cell sensitivity to drugs based on genomic and chemical properties
MP Menden, F Iorio, M Garnett, U McDermott, CH Benes, PJ Ballester, ...
PLoS one 8 (4), e61318, 2013
3282013
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
1902014
Transcriptional data: a new gateway to drug repositioning?
F Iorio, T Rittman, H Ge, M Menden, J Saez-Rodriguez
Drug discovery today 18 (7-8), 350-357, 2013
1882013
Pharmacogenomic agreement between two cancer cell line data sets
Cancer Cell Line Encyclopedia Consortium, ...
Nature 528 (7580), 84, 2015
1842015
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
952019
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933-940, 2015
912015
Adaptive informatics for multifactorial and high-content biological data
BL Millard, M Niepel, MP Menden, JL Muhlich, PK Sorger
Nature methods 8 (6), 487-492, 2011
732011
GDSCTools for mining pharmacogenomic interactions in cancer
T Cokelaer, E Chen, F Iorio, MP Menden, H Lightfoot, J Saez-Rodriguez, ...
Bioinformatics 34 (7), 1226-1228, 2018
252018
Applying synergy metrics to combination screening data: agreements, disagreements and pitfalls
AHC Vlot, N Aniceto, MP Menden, G Ulrich-Merzenich, A Bender
Drug discovery today 24 (12), 2286-2298, 2019
222019
DREAMTools: a Python package for scoring collaborative challenges
T Cokelaer, M Bansal, C Bare, E Bilal, BM Bot, EC Neto, F Eduati, ...
F1000Research 4, 2015
212015
The germline genetic component of drug sensitivity in cancer cell lines
MP Menden, FP Casale, J Stephan, GR Bignell, F Iorio, U McDermott, ...
Nature communications 9 (1), 1-8, 2018
182018
A cancer pharmacogenomic screen powering crowd-sourced advancement of drug combination prediction
MP Menden, D Wang, Y Guan, MJ Mason, B Szalai, KC Bulusu, T Yu, ...
BioRxiv, 200451, 2018
172018
A community challenge for inferring genetic predictors of gene essentialities through analysis of a functional screen of cancer cell lines
M Gönen, BA Weir, GS Cowley, F Vazquez, Y Guan, A Jaiswal, ...
Cell systems 5 (5), 485-497. e3, 2017
142017
Quantitative proteome landscape of the NCI-60 cancer cell lines
T Guo, A Luna, VN Rajapakse, CC Koh, Z Wu, W Liu, Y Sun, H Gao, ...
Iscience 21, 664-680, 2019
102019
Community assessment of cancer drug combination screens identifies strategies for synergy prediction
MP Menden, D Wang, Y Guan, M Mason, B Szalai, KC Bulusu, T Yu, ...
bioRxiv, 200451, 2017
92017
Defining subpopulations of differential drug response to reveal novel target populations
N Keshava, TS Toh, H Yuan, B Yang, MP Menden, D Wang
NPJ systems biology and applications 5 (1), 1-11, 2019
82019
NCI DREAM Community, Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G. A community effort to assess and improve drug sensitivity prediction …
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nat Biotechnol 32 (12), 1202-12, 2014
82014
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Articles 1–20