|A proteome-scale map of the human interactome network|
T Rolland, M Taşan, B Charloteaux, SJ Pevzner, Q Zhong, N Sahni, S Yi, ...
Cell 159 (5), 1212-1226, 2014
|Uncovering disease-disease relationships through the incomplete interactome|
J Menche, A Sharma, M Kitsak, SD Ghiassian, M Vidal, J Loscalzo, ...
Science 347 (6224), 2015
|Human symptoms–disease network|
XZ Zhou, J Menche, AL Barabási, A Sharma
Nature communications 5 (1), 1-10, 2014
|Canonical Genetic Signatures of the Adult Human Brain|
M Hawrylycz, JA Miller, V Menon, D Feng, T Dolbeare, ...
Nature Neuroscience, 2015
|Network-based in silico drug efficacy screening|
E Guney, J Menche, M Vidal, AL Barábasi
Nature communications 7 (1), 1-13, 2016
|A DIseAse MOdule Detection (DIAMOnD) algorithm derived from a systematic analysis of connectivity patterns of disease proteins in the human interactome|
SD Ghiassian, J Menche, AL Barabási
PLoS Comput Biol 11 (4), e1004120, 2015
|A disease module in the interactome explains disease heterogeneity, drug response and captures novel pathways and genes in asthma|
A Sharma, J Menche, CC Huang, T Ort, X Zhou, M Kitsak, N Sahni, ...
Human molecular genetics 24 (11), 3005-3020, 2015
|Assessment of network module identification across complex diseases|
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
|Tissue specificity of human disease module|
M Kitsak, A Sharma, J Menche, E Guney, SD Ghiassian, J Loscalzo, ...
Scientific reports 6 (1), 1-12, 2016
|Asymptotic properties of degree-correlated scale-free networks|
J Menche, A Valleriani, R Lipowsky
Physical review E 81 (4), 046103, 2010
|Endophenotype network models: common core of complex diseases|
SD Ghiassian, J Menche, DI Chasman, F Giulianini, R Wang, P Ricchiuto, ...
Scientific reports 6, 27414, 2016
|Interactome-based approaches to human disease|
M Caldera, P Buphamalai, F Müller, J Menche
Current Opinion in Systems Biology 3, 88-94, 2017
|Integrating personalized gene expression profiles into predictive disease-associated gene pools|
J Menche, E Guney, A Sharma, PJ Branigan, MJ Loza, F Baribaud, ...
NPJ systems biology and applications 3 (1), 1-10, 2017
|Network-based analysis of genome wide association data provides novel candidate genes for lipid and lipoprotein traits|
A Sharma, N Gulbahce, SJ Pevzner, J Menche, C Ladenvall, L Folkersen, ...
Molecular & Cellular Proteomics 12 (11), 3398-3408, 2013
|An inter‐species protein–protein interaction network across vast evolutionary distance|
Q Zhong, SJ Pevzner, T Hao, Y Wang, R Mosca, J Menche, M Taipale, ...
Molecular systems biology 12 (4), 865, 2016
|Systems Medicine: from molecular features and models to the clinic in COPD|
D Gomez-Cabrero, J Menche, I Cano, I Abugessaisa, ...
Journal of Translational Medicine 12 (2), 1-11, 2014
|Two particles with bistable coupling on a ratchet|
J Menche, L Schimansky-Geier
Physics Letters A 359 (2), 90-98, 2006
|Non-classical monocytes as mediators of tissue destruction in arthritis|
A Puchner, V Saferding, M Bonelli, Y Mikami, M Hofmann, JS Brunner, ...
Annals of the rheumatic diseases 77 (10), 1490-1497, 2018
|Systematic characterization of BAF mutations provides insights into intracomplex synthetic lethalities in human cancers|
S Schick, AF Rendeiro, K Runggatscher, A Ringler, B Boidol, M Hinkel, ...
Nat Genet 51 (9), 1399-1410, 2019
|MTHFD1 interaction with BRD4 links folate metabolism to transcriptional regulation|
S Sdelci, AF Rendeiro, P Rathert, W You, JMG Lin, A Ringler, ...
Nature genetics 51 (6), 990-998, 2019