Markus List
Markus List
Big Data in BioMedicine, Chair of Experimental Bioinformatics, School of Life Sciences Weihenstephan
Verified email at wzw.tum.de - Homepage
Title
Cited by
Cited by
Year
Ten Simple Rules for Developing Usable Software in Computational Biology
M List, P Ebert, F Albrecht
PLOS Computational Biology 13 (1), e1005265, 2017
412017
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets
F Albrecht, M List, C Bock, T Lengauer
Nucleic acids research 44 (W1), W581-W586, 2016
412016
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ...
Bioinformatics 35 (14), i436-i445, 2019
33*2019
De novo pathway-based biomarker identification
N Alcaraz, M List, R Batra, F Vandin, HJ Ditzel, J Baumbach
Nucleic Acids Research 45 (16), e151-e151, 2017
332017
Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data
M List, AC Hauschild, Q Tan, TA Kruse, J Mollenhauer, J Baumbach, ...
Journal of Integrative Bioinformatics 11 (2), 236, 2014
332014
KeyPathwayMinerWeb: online multi-omics network enrichment
M List, N Alcaraz, M Dissing-Hansen, HJ Ditzel, J Mollenhauer, ...
Nucleic acids research 44 (W1), W98-W104, 2016
262016
On the performance of de novo pathway enrichment
R Batra, N Alcaraz, K Gitzhofer, J Pauling, HJ Ditzel, M Hellmuth, ...
NPJ systems biology and applications 3 (1), 1-8, 2017
232017
Efficient sample tracking with OpenLabFramework
M List, S Schmidt, J Trojnar, J Thomas, M Thomassen, TA Kruse, Q Tan, ...
Scientific reports 4, 4278, 2014
202014
The long non-coding RNA H19 suppresses carcinogenesis and chemoresistance in hepatocellular carcinoma
CS Schultheiss, S Laggai, B Czepukojc, UK Hussein, M List, A Barghash, ...
Cell stress 1 (1), 37, 2017
132017
Systematic screening of isogenic cancer cells identifies DUSP6 as context-specific synthetic lethal target in melanoma
S Wittig-Blaich, R Wittig, S Schmidt, S Lyer, M Bewerunge-Hudler, ...
Oncotarget 8 (14), 23760, 2017
102017
Comprehensive analysis of high-throughput screens with HiTSeekR
M List, S Schmidt, H Christiansen, M Rehmsmeier, Q Tan, J Mollenhauer, ...
Nucleic acids research 44 (14), 6639-6648, 2016
102016
Robust de novo pathway enrichment with KeyPathwayMiner 5
N Alcaraz, M List, M Dissing-Hansen, M Rehmsmeier, Q Tan, ...
F1000Research 5, 2016
102016
Microarray R-based analysis of complex lysate experiments with MIRACLE
M List, I Block, ML Pedersen, H Christiansen, S Schmidt, M Thomassen, ...
Bioinformatics 30 (17), i631-i638, 2014
102014
Hepatocellular Carcinoma and Nuclear Paraspeckles: Induction in Chemoresistance and Prediction for Poor Survival.
SM Kessler, K Hosseini, UK Hussein, KM Kim, M List, CS Schultheiß, ...
Cell Physiol Biochem 52 (4), 787-801, 2019
62019
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets
F Schmidt, M List, E Cukuroglu, S Köhler, J Göke, MH Schulz
Bioinformatics 34 (17), i908-i916, 2018
62018
DeepBlueR: large-scale epigenomic analysis in R
F Albrecht, M List, C Bock, T Lengauer
Bioinformatics 1, 2, 2017
62017
Mass-spectrometry-based draft of the Arabidopsis proteome
J Mergner, M Frejno, M List, M Papacek, X Chen, A Chaudhary, ...
Nature 579 (7799), 409-414, 2020
52020
MiRNA-181d expression significantly affects treatment responses to carmustine wafer implantation
C Sippl, R Ketter, L Bohr, YJ Kim, M List, J Oertel, S Urbschat
Neurosurgery 85 (1), 147-155, 2019
52019
JAMI: fast computation of conditional mutual information for ceRNA network analysis
A Hornakova, M List, J Vreeken, MH Schulz
Bioinformatics 34 (17), 3050-3051, 2018
52018
Using Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform
M List
Journal of integrative bioinformatics 14 (2), 2017
52017
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Articles 1–20