Markus List
Markus List
Big Data in BioMedicine, Chair of Experimental Bioinformatics, TUM School of Life Sciences
Verified email at wzw.tum.de - Homepage
Title
Cited by
Cited by
Year
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ...
Bioinformatics 35 (14), i436-i445, 2019
862019
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets
F Albrecht, M List, C Bock, T Lengauer
Nucleic acids research 44 (W1), W581-W586, 2016
542016
Mass-spectrometry-based draft of the Arabidopsis proteome
J Mergner, M Frejno, M List, M Papacek, X Chen, A Chaudhary, ...
Nature 579 (7799), 409-414, 2020
512020
Ten Simple Rules for Developing Usable Software in Computational Biology
M List, P Ebert, F Albrecht
PLOS Computational Biology 13 (1), e1005265, 2017
492017
Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data
M List, AC Hauschild, Q Tan, TA Kruse, J Mollenhauer, J Baumbach, ...
Journal of Integrative Bioinformatics 11 (2), 236, 2014
392014
De novo pathway-based biomarker identification
N Alcaraz, M List, R Batra, F Vandin, HJ Ditzel, J Baumbach
Nucleic Acids Research 45 (16), e151-e151, 2017
382017
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing
S Sadegh, J Matschinske, DB Blumenthal, G Galindez, T Kacprowski, ...
Nature communications 11 (1), 1-9, 2020
342020
KeyPathwayMinerWeb: online multi-omics network enrichment
M List, N Alcaraz, M Dissing-Hansen, HJ Ditzel, J Mollenhauer, ...
Nucleic acids research 44 (W1), W98-W104, 2016
322016
On the performance of de novo pathway enrichment
R Batra, N Alcaraz, K Gitzhofer, J Pauling, HJ Ditzel, M Hellmuth, ...
NPJ systems biology and applications 3 (1), 1-8, 2017
282017
The long non-coding RNA H19 suppresses carcinogenesis and chemoresistance in hepatocellular carcinoma
CS Schultheiss, S Laggai, B Czepukojc, UK Hussein, M List, A Barghash, ...
Cell stress 1 (1), 37, 2017
252017
Efficient sample tracking with OpenLabFramework
M List, S Schmidt, J Trojnar, J Thomas, M Thomassen, TA Kruse, Q Tan, ...
Scientific reports 4 (1), 1-7, 2014
222014
Robust de novo pathway enrichment with KeyPathwayMiner 5
N Alcaraz, M List, M Dissing-Hansen, M Rehmsmeier, Q Tan, ...
F1000Research 5, 2016
152016
Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes
S Reitmeier, S Kiessling, T Clavel, M List, EL Almeida, TS Ghosh, ...
Cell Host & Microbe 28 (2), 258-272. e6, 2020
14*2020
Hepatocellular Carcinoma and Nuclear Paraspeckles: Induction in Chemoresistance and Prediction for Poor Survival.
SM Kessler, K Hosseini, UK Hussein, KM Kim, M List, CS Schultheiß, ...
Cell Physiol Biochem 52 (4), 787-801, 2019
142019
Systematic screening of isogenic cancer cells identifies DUSP6 as context-specific synthetic lethal target in melanoma
S Wittig-Blaich, R Wittig, S Schmidt, S Lyer, M Bewerunge-Hudler, ...
Oncotarget 8 (14), 23760, 2017
122017
Comprehensive analysis of high-throughput screens with HiTSeekR
M List, S Schmidt, H Christiansen, M Rehmsmeier, Q Tan, J Mollenhauer, ...
Nucleic acids research 44 (14), 6639-6648, 2016
112016
Microarray R-based analysis of complex lysate experiments with MIRACLE
M List, I Block, ML Pedersen, H Christiansen, S Schmidt, M Thomassen, ...
Bioinformatics 30 (17), i631-i638, 2014
102014
Interactive microbial distribution analysis using BioAtlas
JB Lund, M List, J Baumbach
Nucleic acids research 45 (W1), W509-W513, 2017
92017
MiRNA-181d expression significantly affects treatment responses to carmustine wafer implantation
C Sippl, R Ketter, L Bohr, YJ Kim, M List, J Oertel, S Urbschat
Neurosurgery 85 (1), 147-155, 2019
82019
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets
F Schmidt, M List, E Cukuroglu, S Köhler, J Göke, MH Schulz
Bioinformatics 34 (17), i908-i916, 2018
82018
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Articles 1–20