Joel Wertheim
Title
Cited by
Cited by
Year
Detecting individual sites subject to episodic diversifying selection
B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, ...
PLoS genetics 8 (7), e1002764, 2012
10742012
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ...
Molecular biology and evolution 32 (5), 1342-1353, 2015
3002015
RELAX: detecting relaxed selection in a phylogenetic framework
JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler
Molecular biology and evolution 32 (3), 820-832, 2015
2742015
Gene-wide identification of episodic selection
B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ...
Molecular biology and evolution 32 (5), 1365-1371, 2015
2502015
Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2
JO Wertheim, M Worobey
PLoS computational biology 5 (5), e1000377, 2009
2352009
The global transmission network of HIV-1
JO Wertheim, AJ Leigh Brown, NL Hepler, SR Mehta, DD Richman, ...
The Journal of infectious diseases 209 (2), 304-313, 2014
2052014
A case for the ancient origin of coronaviruses
JO Wertheim, DKW Chu, JSM Peiris, SL Kosakovsky Pond, LLM Poon
Journal of Virology 87 (12), 7039-7045, 2013
195*2013
Purifying selection can obscure the ancient age of viral lineages
JO Wertheim, SL Kosakovsky Pond
Molecular biology and evolution 28 (12), 3355-3365, 2011
1742011
The emergence of sars-cov-2 in europe and north america
M Worobey, J Pekar, BB Larsen, MI Nelson, V Hill, JB Joy, A Rambaut, ...
Science 370 (6516), 564-570, 2020
165*2020
Social and genetic networks of HIV-1 transmission in New York City
JO Wertheim, SL Kosakovsky Pond, LA Forgione, SR Mehta, B Murrell, ...
PLoS pathogens 13 (1), e1006000, 2017
1312017
HIV-TRACE (TRAnsmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens
SL Kosakovsky Pond, S Weaver, AJ Leigh Brown, JO Wertheim
Molecular biology and evolution 35 (7), 1812-1819, 2018
1292018
Evolutionary origins of human herpes simplex viruses 1 and 2
JO Wertheim, MD Smith, DM Smith, K Scheffler, SLK Pond
Molecular biology and evolution, msu185, 2014
1292014
Using molecular HIV surveillance data to understand transmission between subpopulations in the United States
AM Oster, JO Wertheim, AL Hernandez, MCB Ocfemia, N Saduvala, ...
Journal of acquired immune deficiency syndromes (1999) 70 (4), 444, 2015
1282015
Using HIV networks to inform real time prevention interventions
SJ Little, SL Kosakovsky Pond, CM Anderson, JA Young, JO Wertheim, ...
PloS one 9 (6), e98443, 2014
1272014
The sordid affair between human herpesvirus and HIV
S Gianella, M Massanella, JO Wertheim, DM Smith
The Journal of infectious diseases 212 (6), 845-852, 2015
722015
Relaxed molecular clocks, the bias–variance trade-off, and the quality of phylogenetic inference
JO Wertheim, MJ Sanderson, M Worobey, A Bjork
Systematic biology 59 (1), 1-8, 2010
662010
Targeting HIV prevention based on molecular epidemiology among deeply sampled subnetworks of men who have sex with men
X Wang, Y Wu, L Mao, W Xia, W Zhang, L Dai, SR Mehta, JO Wertheim, ...
Clinical Infectious Diseases 61 (9), 1462-1468, 2015
652015
Evolutionary history of chimpanzees inferred from complete mitochondrial genomes
A Bjork, W Liu, JO Wertheim, BH Hahn, M Worobey
Molecular biology and evolution 28 (1), 615-623, 2011
642011
Identifying clusters of recent and rapid HIV transmission through analysis of molecular surveillance data
AM Oster, AM France, N Panneer, MCB Ocfemia, E Campbell, ...
Journal of acquired immune deficiency syndromes (1999) 79 (5), 543, 2018
632018
Inconsistencies in estimating the age of HIV-1 subtypes due to heterotachy
JO Wertheim, M Fourment, SL Kosakovsky Pond
Molecular biology and evolution 29 (2), 451-456, 2012
632012
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Articles 1–20