| Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation T Baubec, DF Colombo, C Wirbelauer, J Schmidt, L Burger, AR Krebs, ... Nature 520 (7546), 243-247, 2015 | 690 | 2015 |
| H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells K Karmodiya, AR Krebs, M Oulad-Abdelghani, H Kimura, L Tora BMC genomics 13, 1-18, 2012 | 534 | 2012 |
| seqMINER: an integrated ChIP-seq data interpretation platform T Ye, AR Krebs, MA Choukrallah, C Keime, F Plewniak, I Davidson, ... Nucleic acids research 39 (6), e35-e35, 2011 | 432 | 2011 |
| Genome-wide single-molecule footprinting reveals high RNA polymerase II turnover at paused promoters AR Krebs, D Imanci, L Hoerner, D Gaidatzis, L Burger, D Schübeler Molecular cell 67 (3), 411-422. e4, 2017 | 196 | 2017 |
| Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates and humans J Jüttner, A Szabo, B Gross-Scherf, RK Morikawa, SB Rompani, P Hantz, ... Nature Neuroscience 22 (8), 1345-1356, 2019 | 170 | 2019 |
| SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers AR Krebs, K Karmodiya, M Lindahl-Allen, K Struhl, L Tora Molecular cell 44 (3), 410-423, 2011 | 131 | 2011 |
| A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity PA Ginno, D Gaidatzis, A Feldmann, L Hoerner, D Imanci, L Burger, ... Nature communications 11 (1), 2680, 2020 | 115 | 2020 |
| The metazoan ATAC and SAGA coactivator HAT complexes regulate different sets of inducible target genes Z Nagy, A Riss, S Fujiyama, A Krebs, M Orpinell, P Jansen, A Cohen, ... Cellular and Molecular Life Sciences 67, 611-628, 2010 | 111 | 2010 |
| The ATAC acetyl transferase complex controls mitotic progression by targeting non‐histone substrates M Orpinell, M Fournier, A Riss, Z Nagy, AR Krebs, M Frontini, L Tora The EMBO journal 29 (14), 2381-2394, 2010 | 104 | 2010 |
| Molecular co-occupancy identifies transcription factor binding cooperativity in vivo C Sönmezer, R Kleinendorst, D Imanci, G Barzaghi, L Villacorta, ... Molecular cell 81 (2), 255-267. e6, 2021 | 98 | 2021 |
| High-throughput engineering of a mammalian genome reveals building principles of methylation states at CG rich regions AR Krebs, S Dessus-Babus, L Burger, D Schübeler Elife 3, e04094, 2014 | 87 | 2014 |
| Cell-specific occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells I Martianov, MA Choukrallah, A Krebs, T Ye, S Legras, E Rijkers, ... BMC genomics 11, 1-16, 2010 | 72 | 2010 |
| CG dinucleotides enhance promoter activity independent of DNA methylation D Hartl, AR Krebs, RS Grand, T Baubec, L Isbel, C Wirbelauer, L Burger, ... Genome research 29 (4), 554-563, 2019 | 58 | 2019 |
| ATAC and Mediator coactivators form a stable complex and regulate a set of non‐coding RNA genes AR Krebs, J Demmers, K Karmodiya, NC Chang, AC Chang, L Tora EMBO reports 11 (7), 541-547, 2010 | 57 | 2010 |
| Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases K Anamika, AR Krebs, J Thompson, O Poch, D Devys, L Tora Epigenetics & chromatin 3, 1-10, 2010 | 53 | 2010 |
| BANP opens chromatin and activates CpG-island-regulated genes RS Grand, L Burger, C Gräwe, AK Michael, L Isbel, D Hess, L Hoerner, ... Nature 596 (7870), 133-137, 2021 | 50 | 2021 |
| Cis-regulatory landscapes of four cell types of the retina D Hartl, AR Krebs, J Jüttner, B Roska, D Schübeler Nucleic acids research 45 (20), 11607-11621, 2017 | 40 | 2017 |
| GPAT: retrieval of genomic annotation from large genomic position datasets A Krebs, M Frontini, L Tora BMC bioinformatics 9, 1-6, 2008 | 38 | 2008 |
| Single-molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation E Kreibich, R Kleinendorst, G Barzaghi, S Kaspar, AR Krebs Molecular Cell 83 (5), 787-802. e9, 2023 | 35 | 2023 |
| Interpreting and visualizing ChIP-seq data with the seqMINER software T Ye, S Ravens, AR Krebs, L Tora Stem Cell Transcriptional Networks: Methods and Protocols, 141-152, 2014 | 14 | 2014 |
Dirk SchübelerDirector, Friedrich Miescher Institute for Biomedical Research, Basel, SwitzerlandVerified email at fmi.ch
