3DNA: a software package for the analysis, rebuilding and visualization of three‐dimensional nucleic acid structures XJ Lu, WK Olson Nucleic acids research 31 (17), 5108-5121, 2003 | 1683 | 2003 |
DNA sequence-dependent deformability deduced from protein–DNA crystal complexes WK Olson, AA Gorin, XJ Lu, LM Hock, VB Zhurkin Proceedings of the National Academy of Sciences 95 (19), 11163-11168, 1998 | 1119 | 1998 |
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. HM Berman, WK Olson, DL Beveridge, J Westbrook, A Gelbin, T Demeny, ... Biophysical journal 63 (3), 751, 1992 | 1087 | 1992 |
A standard reference frame for the description of nucleic acid base-pair geometry WK Olson, M Bansal, SK Burley, RE Dickerson, M Gerstein, SC Harvey, ... Journal of molecular biology 313 (1), 229-237, 2001 | 600 | 2001 |
3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures XJ Lu, WK Olson Nature protocols 3 (7), 1213, 2008 | 546 | 2008 |
A-form conformational motifs in ligand-bound DNA structures XJ Lu, Z Shakked, WK Olson Journal of molecular biology 300 (4), 819-840, 2000 | 375 | 2000 |
Definitions and nomenclature of nucleic acid structure parameters RE Dickerson Journal of Biomolecular Structure and Dynamics 6 (4), 627-634, 1989 | 361 | 1989 |
Normal mode analysis: theory and applications to biological and chemical systems Q Cui, I Bahar CRC press, 2005 | 360 | 2005 |
Web 3DNA—a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures G Zheng, XJ Lu, WK Olson Nucleic acids research 37 (suppl_2), W240-W246, 2009 | 281 | 2009 |
How flexible is the furanose ring? 1. A comparison of experimental and theoretical studies WK Olson, JL Sussman Journal of the American Chemical Society 104 (1), 270-278, 1982 | 232 | 1982 |
Geometric parameters in nucleic acids: sugar and phosphate constituents A Gelbin, B Schneider, L Clowney, SH Hsieh, WK Olson, HM Berman Journal of the American Chemical Society 118 (3), 519-529, 1996 | 231 | 1996 |
Quasi‐harmonic method for studying very low frequency modes in proteins RM Levy, AR Srinivasan, WK Olson, JA McCammon Biopolymers: Original Research on Biomolecules 23 (6), 1099-1112, 1984 | 226 | 1984 |
Geometric parameters in nucleic acids: nitrogenous bases L Clowney, SC Jain, AR Srinivasan, J Westbrook, WK Olson, HM Berman Journal of the American Chemical Society 118 (3), 509-518, 1996 | 223 | 1996 |
How flexible is the furanose ring? 2. An updated potential energy estimate WK Olson Journal of the American Chemical Society 104 (1), 278-286, 1982 | 221 | 1982 |
A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning MY Tolstorukov, AV Colasanti, DM McCandlish, WK Olson, VB Zhurkin Journal of molecular biology 371 (3), 725-738, 2007 | 218 | 2007 |
Modeling DNA deformations WK Olson, VB Zhurkin Current opinion in structural biology 10 (3), 286-297, 2000 | 204 | 2000 |
DNA stretching and compression: large-scale simulations of double helical structures KM Kosikov, AA Gorin, VB Zhurkin, WK Olson Journal of molecular biology 289 (5), 1301-1326, 1999 | 171 | 1999 |
Simulating DNA at low resolution WK Olson Current opinion in structural biology 6 (2), 242-256, 1996 | 169 | 1996 |
Influence of fluctuations on DNA curvature: a comparison of flexible and static wedge models of intrinsically bent DNA WK Olson, NL Marky, RL Jernigan, VB Zhurkin Journal of molecular biology 232 (2), 530-554, 1993 | 168 | 1993 |
Supercoiled DNA energetics and dynamics by computer simulation T Schlick, WK Olson Journal of molecular biology 223 (4), 1089-1119, 1992 | 159 | 1992 |