|g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments|
J Reimand, M Kull, H Peterson, J Hansen, J Vilo
Nucleic acids research 35 (suppl 2), W193-W200, 2007
|g: Profiler—a web server for functional interpretation of gene lists (2016 update)|
J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo
Nucleic acids research, gkw199, 2016
|Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach|
AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ...
Archives of toxicology 87 (1), 123-143, 2013
|MicroRNA Expression Profiles of Human Blood Monocyte-derived Dendritic Cells and Macrophages Reveal miR-511 as Putative Positive Regulator of Toll-like Receptor 4|
L Tserel, T Runnel, K Kisand, M Pihlap, L Bakhoff, R Kolde, H Peterson, ...
Journal of Biological Chemistry 286 (30), 26487-26495, 2011
|Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods|
P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo
Genome biology 10 (12), R139, 2009
|AIRE-Deficient Patients Harbor Unique High-Affinity Disease-Ameliorating Autoantibodies|
S Meyer, M Woodward, C Hertel, P Vlaicu, Y Haque, J Kärner, A Macagno, ...
Cell 166 (3), 582-595, 2016
|GraphWeb: mining heterogeneous biological networks for gene modules with functional significance|
J Reimand, L Tooming, H Peterson, P Adler, J Vilo
Nucleic acids research 36 (suppl 2), W452-W459, 2008
|A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells|
M Jung, H Peterson, L Chavez, P Kahlem, H Lehrach, J Vilo, J Adjaye
PloS one 5 (5), e10709, 2010
|Tools and data services registry: a community effort to document bioinformatics resources|
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
|g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)|
U Raudvere, L Kolberg, I Kuzmin, T Arak, P Adler, H Peterson, J Vilo
Nucleic acids research, 2019
|KEGGanim: pathway animations for high-throughput data|
P Adler, J Reimand, J Jänes, R Kolde, H Peterson, J Vilo
Bioinformatics 24 (4), 588-590, 2008
|Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development|
N Billon, R Kolde, J Reimand, MC Monteiro, M Kull, H Peterson, ...
Genome biology 11 (8), 1-16, 2010
|Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells|
L Tserel, R Kolde, A Rebane, K Kisand, T Org, H Peterson, J Vilo, ...
BMC genomics 11 (1), 642, 2010
|Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer|
S Altmäe, K Tamm-Rosenstein, FJ Esteban, J Simm, L Kolberg, ...
Reproductive BioMedicine Online, 2016
|Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells|
H Peterson, R Abu Dawud, A Garg, Y Wang, J Vilo, I Xenarios, J Adjaye
Frontiers in Physiology 4, 303, 2013
|The relationship between brain tumor cell invasion of engineered neural tissues and in vivo features of glioblastoma|
Z Nayernia, L Turchi, E Cosset, H Peterson, V Dutoit, PY Dietrich, ...
Biomaterials 34 (33), 8279-8290, 2013
|Ranking Genes by Their Co‐expression to Subsets of Pathway Members|
P Adler, H Peterson, P Agius, J Reimand, J Vilo
Annals of the New York Academy of Sciences 1158 (1), 1-13, 2009
|Fingerprinting of neurotoxic compounds using a mouse embryonic stem cell dual luminescence reporter assay|
M Colaianna, S Ilmjärv, H Peterson, I Kern, S Julien, M Baquié, ...
Archives of Toxicology, 1-27, 2016
|Exploiting high-throughput data for establishing relationships between genes|
|Human three-dimensional engineered neural tissue reveals cellular and molecular events following cytomegalovirus infection|
É Cosset, Y Martinez, O Preynat-Seauve, JA Lobrinus, C Tapparel, ...
Biomaterials 53, 296-308, 2015