| g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments J Reimand, M Kull, H Peterson, J Hansen, J Vilo Nucleic acids research 35 (suppl 2), W193-W200, 2007 | 561 | 2007 |
| g: Profiler—a web server for functional interpretation of gene lists (2016 update) J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo Nucleic acids research, gkw199, 2016 | 505 | 2016 |
| Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ... Archives of toxicology 87 (1), 123-143, 2013 | 161 | 2013 |
| MicroRNA Expression Profiles of Human Blood Monocyte-derived Dendritic Cells and Macrophages Reveal miR-511 as Putative Positive Regulator of Toll-like Receptor 4 L Tserel, T Runnel, K Kisand, M Pihlap, L Bakhoff, R Kolde, H Peterson, ... Journal of Biological Chemistry 286 (30), 26487-26495, 2011 | 128 | 2011 |
| Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo Genome biology 10 (12), R139, 2009 | 119 | 2009 |
| AIRE-Deficient Patients Harbor Unique High-Affinity Disease-Ameliorating Autoantibodies S Meyer, M Woodward, C Hertel, P Vlaicu, Y Haque, J Kärner, A Macagno, ... Cell 166 (3), 582-595, 2016 | 100 | 2016 |
| GraphWeb: mining heterogeneous biological networks for gene modules with functional significance J Reimand, L Tooming, H Peterson, P Adler, J Vilo Nucleic acids research 36 (suppl 2), W452-W459, 2008 | 90 | 2008 |
| A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells M Jung, H Peterson, L Chavez, P Kahlem, H Lehrach, J Vilo, J Adjaye PloS one 5 (5), e10709, 2010 | 84 | 2010 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 64 | 2016 |
| KEGGanim: pathway animations for high-throughput data P Adler, J Reimand, J Jänes, R Kolde, H Peterson, J Vilo Bioinformatics 24 (4), 588-590, 2008 | 31 | 2008 |
| Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells L Tserel, R Kolde, A Rebane, K Kisand, T Org, H Peterson, J Vilo, ... BMC genomics 11 (1), 642, 2010 | 27 | 2010 |
| Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development N Billon, R Kolde, J Reimand, MC Monteiro, M Kull, H Peterson, ... Genome biology 11 (8), 1-16, 2010 | 26 | 2010 |
| Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells H Peterson, R Abu Dawud, A Garg, Y Wang, J Vilo, I Xenarios, J Adjaye Frontiers in Physiology 4, 303, 2013 | 21 | 2013 |
| Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer S Altmäe, K Tamm-Rosenstein, FJ Esteban, J Simm, L Kolberg, ... Reproductive BioMedicine Online, 2016 | 18 | 2016 |
| The relationship between brain tumor cell invasion of engineered neural tissues and in vivo features of glioblastoma Z Nayernia, L Turchi, E Cosset, H Peterson, V Dutoit, PY Dietrich, ... Biomaterials 34 (33), 8279-8290, 2013 | 14 | 2013 |
| g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) U Raudvere, L Kolberg, I Kuzmin, T Arak, P Adler, H Peterson, J Vilo Nucleic acids research, 2019 | 13 | 2019 |
| Ranking Genes by Their Co‐expression to Subsets of Pathway Members P Adler, H Peterson, P Agius, J Reimand, J Vilo Annals of the New York Academy of Sciences 1158 (1), 1-13, 2009 | 12 | 2009 |
| Fingerprinting of neurotoxic compounds using a mouse embryonic stem cell dual luminescence reporter assay M Colaianna, S Ilmjärv, H Peterson, I Kern, S Julien, M Baquié, ... Archives of Toxicology, 1-27, 2016 | 11 | 2016 |
| Autoantibody repertoire in APECED patients targets two distinct subgroups of proteins D Fishman, K Kisand, C Hertel, M Rothe, A Remm, M Pihlap, P Adler, ... Frontiers in Immunology 8, 976, 2017 | 10 | 2017 |
| Human three-dimensional engineered neural tissue reveals cellular and molecular events following cytomegalovirus infection É Cosset, Y Martinez, O Preynat-Seauve, JA Lobrinus, C Tapparel, ... Biomaterials 53, 296-308, 2015 | 8 | 2015 |
Jaak ViloProf. of Bioinformatics, Institute of Computer Science, University of Tartu, EstoniaVerified email at ut.ee