| g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) U Raudvere, L Kolberg, I Kuzmin, T Arak, P Adler, H Peterson, J Vilo Nucleic acids research, 2019 | 5001 | 2019 |
| g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments J Reimand, M Kull, H Peterson, J Hansen, J Vilo Nucleic acids research 35 (suppl 2), W193-W200, 2007 | 1496 | 2007 |
| g: Profiler—a web server for functional interpretation of gene lists (2016 update) J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo Nucleic acids research, gkw199, 2016 | 1418 | 2016 |
| gprofiler2--an R package for gene list functional enrichment analysis and namespace conversion toolset g: Profiler L Kolberg, U Raudvere, I Kuzmin, J Vilo, H Peterson F1000Research 9, 2020 | 713 | 2020 |
| g: Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update) L Kolberg, U Raudvere, I Kuzmin, P Adler, J Vilo, H Peterson Nucleic Acids Research, gkad347, 2023 | 626 | 2023 |
| AIRE-deficient patients harbor unique high-affinity disease-ameliorating autoantibodies S Meyer, M Woodward, C Hertel, P Vlaicu, Y Haque, J Kärner, A Macagno, ... Cell 166 (3), 582-595, 2016 | 293 | 2016 |
| Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ... Archives of toxicology 87 (1), 123-143, 2013 | 253 | 2013 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 183 | 2016 |
| Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo Genome biology 10 (12), R139, 2009 | 176 | 2009 |
| MicroRNA Expression Profiles of Human Blood Monocyte-derived Dendritic Cells and Macrophages Reveal miR-511 as Putative Positive Regulator of Toll-like Receptor 4 L Tserel, T Runnel, K Kisand, M Pihlap, L Bakhoff, R Kolde, H Peterson, ... Journal of Biological Chemistry 286 (30), 26487-26495, 2011 | 170 | 2011 |
| GraphWeb: mining heterogeneous biological networks for gene modules with functional significance J Reimand, L Tooming, H Peterson, P Adler, J Vilo Nucleic acids research 36 (suppl 2), W452-W459, 2008 | 117 | 2008 |
| A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells M Jung, H Peterson, L Chavez, P Kahlem, H Lehrach, J Vilo, J Adjaye PloS one 5 (5), e10709, 2010 | 104 | 2010 |
| Longitudinal proteomic profiling reveals increased early inflammation and sustained apoptosis proteins in severe COVID-19 L Haljasmägi, A Salumets, AP Rumm, M Jürgenson, E Krassohhina, ... Scientific reports 10 (1), 1-12, 2020 | 93 | 2020 |
| The bio. tools registry of software tools and data resources for the life sciences J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ... Genome biology 20 (1), 1-4, 2019 | 70 | 2019 |
| Prediction of prime editing insertion efficiencies using sequence features and DNA repair determinants J Koeppel, J Weller, EM Peets, A Pallaseni, I Kuzmin, U Raudvere, ... Nature Biotechnology, 1-11, 2023 | 55 | 2023 |
| C-reactive protein upregulates the whole blood expression of CD59-an integrative analysis K Lepik, T Annilo, V Kukuškina, K Kisand, Z Kutalik, P Peterson, ... PLOS Computational Biology 13 (9), e1005766, 2017 | 55 | 2017 |
| Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer S Altmäe, K Tamm-Rosenstein, FJ Esteban, J Simm, L Kolberg, ... Reproductive BioMedicine Online, 2016 | 55 | 2016 |
| Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells L Tserel, R Kolde, A Rebane, K Kisand, T Org, H Peterson, J Vilo, ... BMC genomics 11 (1), 642, 2010 | 52 | 2010 |
| HENA, heterogeneous network-based data set for Alzheimer’s disease E Sügis, J Dauvillier, A Leontjeva, P Adler, V Hindie, T Moncion, V Collura, ... Scientific data 6, 2019 | 50 | 2019 |
| Autoantibody repertoire in APECED patients targets two distinct subgroups of proteins D Fishman, K Kisand, C Hertel, M Rothe, A Remm, M Pihlap, P Adler, ... Frontiers in Immunology 8, 976, 2017 | 49 | 2017 |
Jaak ViloProf. of Bioinformatics, Institute of Computer Science, University of Tartu, EstoniaVerified email at ut.ee
