Mingfu Shao
Mingfu Shao
Department of Computer Science and Engineerings, The Pennsylvania State University
Verified email at - Homepage
Cited by
Cited by
Accurate assembly of transcripts through phase-preserving graph decomposition
M Shao, C Kingsford
Nature biotechnology 35 (12), 1167-1169, 2017
An exact algorithm to compute the double-cut-and-join distance for genomes with duplicate genes
M Shao, Y Lin, BME Moret
Journal of Computational Biology 22 (5), 425-435, 2015
Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion
M Shao, Y Lin
BMC bioinformatics 13 (19), 1-9, 2012
Comparing genomes with rearrangements and segmental duplications
M Shao, BME Moret
Bioinformatics 31 (12), i329-i338, 2015
SQUID: transcriptomic structural variation detection from RNA-seq
C Ma, M Shao, C Kingsford
Genome biology 19 (1), 1-16, 2018
Theory and a heuristic for the minimum path flow decomposition problem
M Shao, C Kingsford
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
Sorting genomes with rearrangements and segmental duplications through trajectory graphs
M Shao, Y Lin, B Moret
BMC Bioinformatics 14 (Suppl 15), S9, 2013
DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields
M Shao, J Ma, S Wang
Bioinformatics 33 (14), i267-i273, 2017
On computing breakpoint distances for genomes with duplicate genes
M Shao, B Moret
Journal of Computational Biology 24 (6), 571-580, 2017
A fast and exact algorithm for the exemplar breakpoint distance
M Shao, BME Moret
Journal of Computational Biology 23 (5), 337-346, 2016
Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads
LH Tung, M Shao, C Kingsford
Genome biology 20 (1), 1-18, 2019
Incorporating Ab Initio energy into threading approaches for protein structure prediction
M Shao, S Wang, C Wang, X Yuan, SC Li, W Zheng, D Bu
BMC bioinformatics 12 (Suppl 1), S54, 2011
A maximum-likelihood approach for building cell-type trees by lifting
NU Nair, L Hunter, M Shao, P Grnarova, Y Lin, P Bucher, BM E Moret
BMC genomics 17 (1), 33-40, 2016
Scallop2 enables accurate assembly of multiple-end RNA-seq data
Q Zhang, Q Shi, M Shao
bioRxiv, 2021
On bridging paired-end RNA-seq data
X Li, Q Shi, M Shao
BioRxiv, 2021
Context-aware seeds for read mapping
H Xin, M Shao, C Kingsford
Algorithms for Molecular Biology 15 (1), 1-12, 2020
Improving protein threading accuracy via combining local and global potential using treecrf model
H Zhang, M Shao, C Wang, J Zhu, WM Zheng, D Bu
arXiv preprint arXiv:1509.03434, 2015
Models and algorithms for comparative genomics
M Shao
EPFL, 2015
On the DCJ median problem
M Shao, BME Moret
Symposium on Combinatorial Pattern Matching, 273-282, 2014
Locality-sensitive bucketing functions
K Chen, M Shao
arXiv preprint arXiv:2206.03097, 2022
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