Susannah Tringe

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Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Jeff DanglProfessor--HHMI and Dept of Biology; UNC-Chapel HillVerified email at email.unc.edu
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
Julien TremblayStaff scientist, National Research Council CanadaVerified email at nrc-cnrc.gc.ca
Brian C. ThomasCEO/Founder, Metagenomi.coVerified email at metagenomi.co
Derek Severi LundbergSwedish University of Agricultural Sciences (SLU)Verified email at slu.se
James TiedjeProfessor of Plant, Soil and Microbial Sciences and of Microbiology and Molecular Genetics, MichiganVerified email at msu.edu
Matthias HessUC DavisVerified email at ucdavis.edu
Shaomei HeUniversity of Wisconsin-MadisonVerified email at wisc.edu
Kenneth H. WilliamsLawrence Berkeley National LaboratoryVerified email at lbl.gov
Asaf SalamovJoint Genome InstituteVerified email at lbl.gov
Axel ViselLawrence Berkeley National LaboratoryVerified email at lbl.gov
Ruth E. LeyDepartment of Microbiome Science, Max Planck Institute for Developmental Biology, TübingenVerified email at tuebingen.mpg.de
Laura HugAssistant Professor, University of Waterloo Department of BiologyVerified email at uwaterloo.ca
Peer BorkEMBLVerified email at embl.de
Boran KartalGroup Leader, Microbial Physiology Group, Max Planck Institute for Marine MicrobiologyVerified email at mpi-bremen.de
Kyle R. FrischkornSenior Editor, Nature CommunicationsVerified email at us.nature.com
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Alex CopelandJoint Genome InstituteVerified email at lbl.gov
Kelly C. WrightonColorado State UniversityVerified email at colostate.edu

Susannah Tringe

Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory

Verified email at lbl.gov - Homepage

Metagenomics bioinformatics genomics


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Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012	2049	2012
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	1869	2005
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	1869	2005
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560-565, 2007	1398	2007
Diversity and heritability of the maize rhizosphere microbiome under field conditions JA Peiffer, A Spor, O Koren, Z Jin, SG Tringe, JL Dangl, ES Buckler, ... Proceedings of the National Academy of Sciences 110 (16), 6548-6553, 2013	1330	2013
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ... Science 331 (6016), 463-467, 2011	1274	2011
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017	807	2017
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa SL Lebeis, SH Paredes, DS Lundberg, N Breakfield, J Gehring, ... Science 349 (6250), 860-864, 2015	695	2015
Metagenomics: DNA sequencing of environmental samples SG Tringe, EM Rubin Nature reviews genetics 6 (11), 805-814, 2005	635	2005
A renaissance for the pioneering 16S rRNA gene SG Tringe, P Hugenholtz Current opinion in microbiology 11 (5), 442-446, 2008	557	2008
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill OU Mason, TC Hazen, S Borglin, PSG Chain, EA Dubinsky, JL Fortney, ... The ISME journal 6 (9), 1715-1727, 2012	531	2012
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant MR Wagner, DS Lundberg, TG Del Rio, SG Tringe, JL Dangl, ... Nature communications 7 (1), 1-15, 2016	512	2016
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer Microbiome 2 (1), 1-18, 2014	472	2014
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy CMK Sieber, AJ Probst, A Sharrar, BC Thomas, M Hess, SG Tringe, ... Nature microbiology 3 (7), 836-843, 2018	456	2018
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling CJ Castelle, KC Wrighton, BC Thomas, LA Hug, CT Brown, MJ Wilkins, ... Current biology 25 (6), 690-701, 2015	456	2015
Plant–microbiome interactions: from community assembly to plant health P Trivedi, JE Leach, SG Tringe, T Sa, BK Singh Nature reviews microbiology 18 (11), 607-621, 2020	450	2020
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species D Coleman‐Derr, D Desgarennes, C Fonseca‐Garcia, S Gross, ... New Phytologist 209 (2), 798-811, 2016	443	2016
Primer and platform effects on 16S rRNA tag sequencing J Tremblay, K Singh, A Fern, ES Kirton, S He, T Woyke, J Lee, F Chen, ... Frontiers in microbiology 6, 771, 2015	430	2015
Quantitative phylogenetic assessment of microbial communities in diverse environments C Von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, ... science 315 (5815), 1126-1130, 2007	382	2007
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling LA Hug, CJ Castelle, KC Wrighton, BC Thomas, I Sharon, KR Frischkorn, ... Microbiome 1 (1), 1-17, 2013	366	2013

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