| Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015 | 539 | 2015 |
| Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular Systems Biology 11 (12), 852, 2015 | 331 | 2015 |
| FANTOM5 CAGE profiles of human and mouse samples S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ... Scientific data 4 (1), 1-10, 2017 | 180 | 2017 |
| Maternal immune activation results in complex microglial transcriptome signature in the adult offspring that is reversed by minocycline treatment D Mattei, A Ivanov, C Ferrai, P Jordan, D Guneykaya, A Buonfiglioli, ... Translational psychiatry 7 (5), e1120-e1120, 2017 | 173 | 2017 |
| Nuclear myosin VI enhances RNA polymerase II-dependent transcription S Vreugde, C Ferrai, A Miluzio, E Hauben, PC Marchisio, MP Crippa, ... Molecular cell 23 (5), 749-755, 2006 | 159 | 2006 |
| Arx is a direct target of Dlx2 and thereby contributes to the tangential migration of GABAergic interneurons G Colasante, P Collombat, V Raimondi, D Bonanomi, C Ferrai, M Maira, ... Journal of Neuroscience 28 (42), 10674-10686, 2008 | 154 | 2008 |
| Poised transcription factories prime silent uPA gene prior to activation C Ferrai, SQ Xie, P Luraghi, D Munari, F Ramirez, MR Branco, A Pombo, ... PLoS biology 8 (1), e1000270, 2010 | 101 | 2010 |
| Gene positioning C Ferrai, IJ de Castro, L Lavitas, M Chotalia, A Pombo Cold Spring Harbor perspectives in biology 2 (6), a000588, 2010 | 94 | 2010 |
| p160 Myb-binding protein interacts with Prep1 and inhibits its transcriptional activity VM Díaz, S Mori, E Longobardi, G Menendez, C Ferrai, RA Keough, ... Molecular and cellular biology 27 (22), 7981-7990, 2007 | 55 | 2007 |
| Binding of Sp1 to the proximal promoter links constitutive expression of the human uPA gene and invasive potential of PC3 cells I Ibanez-Tallon, C Ferrai, E Longobardi, I Facetti, F Blasi, MP Crippa Blood, The Journal of the American Society of Hematology 100 (9), 3325-3332, 2002 | 55 | 2002 |
| Induction of HoxB transcription by retinoic acid requires actin polymerization C Ferrai, G Naum-Onganía, E Longobardi, M Palazzolo, A Disanza, ... Molecular biology of the cell 20 (15), 3543-3551, 2009 | 49 | 2009 |
| Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells JD Dias, T Rito, E Torlai Triglia, A Kukalev, C Ferrai, M Chotalia, ... Elife 4, e11215, 2015 | 42 | 2015 |
| Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection E Wyler, J Menegatti, V Franke, C Kocks, A Boltengagen, T Hennig, ... Genome Biology 18, 1-19, 2017 | 38 | 2017 |
| RNA polymerase II primes Polycomb‐repressed developmental genes throughout terminal neuronal differentiation C Ferrai, E Torlai Triglia, JR Risner‐Janiczek, T Rito, OJL Rackham, ... Molecular systems biology 13 (10), 946, 2017 | 35 | 2017 |
| The rest repression of the neurosecretory phenotype is negatively modulated by BHC80, a protein of the BRAF/HDAC complex A Klajn, C Ferrai, L Stucchi, I Prada, P Podini, T Baba, M Rocchi, ... Journal of Neuroscience 29 (19), 6296-6307, 2009 | 28 | 2009 |
| Down syndrome fibroblasts and mouse Prep1-overexpressing cells display increased sensitivity to genotoxic stress N Micali, E Longobardi, G Iotti, C Ferrai, L Castagnaro, M Ricciardi, ... Nucleic acids research 38 (11), 3595-3604, 2010 | 27 | 2010 |
| Prep1 Directly Regulates the Intrinsic Apoptotic Pathway by Controlling Bcl-XL Levels N Micali, C Ferrai, LC Fernandez-Diaz, F Blasi, MP Crippa Molecular and cellular biology 29 (5), 1143-1151, 2009 | 24 | 2009 |
| A transcription-dependent micrococcal nuclease-resistant fragment of the urokinase-type plasminogen activator promoter interacts with the enhancer. C Ferrai, D Munari, P Luraghi, L Pecciarini, M Cangi, C Doglioni, F Blasi, ... Journal of Biological Chemistry, 2007 | 22* | 2007 |
| 3D chromatin regulation of Sonic hedgehog in the limb buds C Ferrai, A Pombo Developmental cell 16 (1), 9-11, 2009 | 7 | 2009 |
| Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network M Grapotte, M Saraswat, C Bessière, C Menichelli, JA Ramilowski, ... Nature communications 12 (1), 3297, 2021 | 5 | 2021 |
Ana PomboProfessor Humboldt University and Berlin Institute for Medical Systems Biology, Max Delbrück CentreVerified email at mdc-berlin.de
