| Unicycler: resolving bacterial genome assemblies from short and long sequencing reads RR Wick, LM Judd, CL Gorrie, KE Holt PLoS computational biology 13 (6), e1005595, 2017 | 5267 | 2017 |
| Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ... Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015 | 1139 | 2015 |
| Completing bacterial genome assemblies with multiplex MinION sequencing RR Wick, LM Judd, CL Gorrie, KE Holt Microbial genomics 3 (10), e000132, 2017 | 665 | 2017 |
| Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ... Clinical infectious diseases 65 (2), 208-215, 2017 | 457 | 2017 |
| Identification of Klebsiella capsule synthesis loci from whole genome data KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ... Microbial genomics 2 (12), e000102, 2016 | 452 | 2016 |
| Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ... Microbial genomics 4 (9), e000196, 2018 | 295 | 2018 |
| Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ... PLoS genetics 15 (4), e1008114, 2019 | 261 | 2019 |
| Completing bacterial genome assemblies with multiplex MinION sequencing. Microb Genom 3: e000132 RR Wick, LM Judd, CL Gorrie, KE Holt | 132 | 2017 |
| Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital CL Gorrie, M Mirceta, RR Wick, LM Judd, KL Wyres, NR Thomson, ... Clinical infectious diseases 67 (2), 161-170, 2018 | 126 | 2018 |
| Differential host susceptibility and bacterial virulence factors driving Klebsiella liver abscess in an ethnically diverse population IR Lee, JS Molton, KL Wyres, C Gorrie, J Wong, CH Hoh, J Teo, ... Scientific reports 6 (1), 29316, 2016 | 118 | 2016 |
| Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258 KL Wyres, C Gorrie, DJ Edwards, HFL Wertheim, LY Hsu, N Van Kinh, ... Genome biology and evolution 7 (5), 1267-1279, 2015 | 109 | 2015 |
| Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era DA Williamson, EPF Chow, CL Gorrie, T Seemann, DJ Ingle, N Higgins, ... Nature communications 10 (1), 3988, 2019 | 86 | 2019 |
| Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016 NL Sherry, CR Lane, JC Kwong, M Schultz, M Sait, K Stevens, S Ballard, ... Journal of Clinical Microbiology 57 (9), 10.1128/jcm. 00573-19, 2019 | 73 | 2019 |
| Genomics of vancomycin-resistant Enterococcus faecium C Gorrie, C Higgs, G Carter, TP Stinear, B Howden Microbial genomics 5 (7), e000283, 2019 | 70 | 2019 |
| Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen CL Gorrie, M Mirčeta, RR Wick, LM Judd, MMC Lam, R Gomi, IJ Abbott, ... Nature communications 13 (1), 3017, 2022 | 68 | 2022 |
| Identification of Klebsiella capsule synthesis loci from whole genome data. Microb Genom 2: e000102 KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ... | 64 | 2016 |
| Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis CL Gorrie, AG Da Silva, DJ Ingle, C Higgs, T Seemann, TP Stinear, ... The Lancet Microbe 2 (11), e575-e583, 2021 | 43* | 2021 |
| An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance NL Sherry, KA Horan, SA Ballard, A Gonҫalves da Silva, CL Gorrie, ... Nature communications 14 (1), 60, 2023 | 38 | 2023 |
| Klebsiella pneumoniae induces host metabolic stress that promotes tolerance to pulmonary infection TWF Lung, D Charytonowicz, KG Beaumont, SS Shah, SH Sridhar, ... Cell metabolism 34 (5), 761-774. e9, 2022 | 35 | 2022 |
| Genomic Insights Into Last-Line Antimicrobial Resistance in Multidrug-Resistant Staphylococcus and Vancomycin-Resistant Enterococcus AM Turner, JYH Lee, CL Gorrie, BP Howden, GP Carter Frontiers in Microbiology 12, 637656, 2021 | 26 | 2021 |
