| WFA-GPU: Gap-affine pairwise read-alignment using GPUs Q Aguado-Puig, M Doblas, C Matzoros, A Espinosa, JC Moure, ... Bioinformatics, btad701, 2023 | 27* | 2023 |
| Accelerating Edit-Distance Sequence Alignment on GPU Using the Wavefront Algorithm Q Aguado-Puig, S Marco-Sola, JC Moure, D Castells-Rufas, L Alvarez, ... IEEE access 10, 63782-63796, 2022 | 20 | 2022 |
| FPGA acceleration of pre-alignment filters for short read mapping with HLS D Castells-Rufas, S Marco-Sola, JC Moure, Q Aguado, A Espinosa IEEE Access 10, 22079-22100, 2022 | 12 | 2022 |
| OpenCL-based FPGA Accelerator for Semi-Global Approximate String Matching Using Diagonal Bit-Vectors D Castells-Rufas, S Marco-Sola, Q Aguado-Puig, A Espinosa-Morales, ... 2021 31st International Conference on Field-Programmable Logic and …, 2021 | 11 | 2021 |
| GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment M Doblas, O Lostes-Cazorla, Q Aguado-Puig, N Cebry, P Fontova-Musté, ... Proceedings of the 56th Annual IEEE/ACM International Symposium on …, 2023 | 8 | 2023 |
| GenArchBench: A genomics benchmark suite for arm HPC processors L López-Villellas, R Langarita-Benítez, A Badouh, V Soria-Pardos, ... Future Generation Computer Systems 157, 313-329, 2024 | 4 | 2024 |
| BIMSA: accelerating long sequence alignment using processing-in-memory A Alonso-Marín, I Fernandez, Q Aguado-Puig, J Gómez-Luna, ... Bioinformatics 40 (11), btae631, 2024 | 1 | 2024 |
| Accelerating long sequence alignment using processing-in-memory A Alonso Marín, I Fernández Vega, S Marco Sola, J Gómez Luna, ... | | 2024 |
| QuickEd: High-performance exact sequence alignment based on bound-and-align M Doblas, O Lostes-Cazorla, Q Aguado-Puig, C Iñiguez, M Moretó, ... bioRxiv, 2024.09. 13.612714, 2024 | | 2024 |
| Accelerating pairwise sequence alignment on GPUs using the Wavefront Algorithm Q Aguado Puig Universitat Politècnica de Catalunya, 2022 | | 2022 |
