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Stephanie Fraley
Stephanie Fraley
Associate Professor of Bioengineering
Adresse e-mail validée de ucsd.edu - Page d'accueil
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A distinctive role for focal adhesion proteins in three-dimensional cell motility
SI Fraley, Y Feng, R Krishnamurthy, DH Kim, A Celedon, GD Longmore, ...
Nature cell biology 12 (6), 598-604, 2010
7352010
Hypoxia-inducible factor 1 is a master regulator of breast cancer metastatic niche formation
CCL Wong, DM Gilkes, H Zhang, J Chen, H Wei, P Chaturvedi, SI Fraley, ...
Proceedings of the National Academy of Sciences 108 (39), 16369-16374, 2011
5032011
Emerging technologies for molecular diagnosis of sepsis
M Sinha, J Jupe, H Mack, TP Coleman, SM Lawrence, SI Fraley
Clinical microbiology reviews 31 (2), 10.1128/cmr. 00089-17, 2018
3082018
Three-dimensional matrix fiber alignment modulates cell migration and MT1-MMP utility by spatially and temporally directing protrusions
SI Fraley, P Wu, L He, Y Feng, R Krisnamurthy, GD Longmore, D Wirtz
Scientific reports 5 (1), 14580, 2015
2462015
A global transcriptional network connecting noncoding mutations to changes in tumor gene expression
W Zhang, A Bojorquez-Gomez, DO Velez, G Xu, KS Sanchez, JP Shen, ...
Nature genetics 50 (4), 613-620, 2018
1472018
3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry
DO Velez, B Tsui, T Goshia, CL Chute, A Han, H Carter, SI Fraley
Nature communications 8 (1), 1651, 2017
1242017
Dimensional and temporal controls of three-dimensional cell migration by zyxin and binding partners
SI Fraley, Y Feng, A Giri, GD Longmore, D Wirtz
Nature communications 3 (1), 719, 2012
1222012
A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes
KE Scott, SI Fraley, P Rangamani
Proceedings of the National Academy of Sciences 118 (20), e2021571118, 2021
812021
Trainable high resolution melt curve machine learning classifier for large-scale reliable genotyping of sequence variants
P Athamanolap, V Parekh, SI Fraley, V Agarwal, DJ Shin, MA Jacobs, ...
PloS one 9 (10), e109094, 2014
632014
Cell adhesiveness serves as a biophysical marker for metastatic potential
P Beri, A Popravko, B Yeoman, A Kumar, K Chen, E Hodzic, A Chiang, ...
Cancer research 80 (4), 901-911, 2020
552020
Nested machine learning facilitates increased sequence content for large-scale automated high resolution melt genotyping
SI Fraley, P Athamanolap, BJ Masek, J Hardick, KC Carroll, YH Hsieh, ...
Scientific reports 6 (1), 19218, 2016
502016
Universal digital high-resolution melt: a novel approach to broad-based profiling of heterogeneous biological samples
SI Fraley, J Hardick, B Jo Masek, P Athamanolap, RE Rothman, ...
Nucleic acids research 41 (18), e175-e175, 2013
492013
Macromolecular crowding tunes 3D collagen architecture and cell morphogenesis
SK Ranamukhaarachchi, RN Modi, A Han, DO Velez, A Kumar, AJ Engler, ...
Biomaterials science 7 (2), 618-633, 2019
482019
Massively parallel digital high resolution melt for rapid and absolutely quantitative sequence profiling
DO Velez, H Mack, J Jupe, S Hawker, N Kulkarni, B Hedayatnia, Y Zhang, ...
Scientific Reports 7 (1), 42326, 2017
482017
3D collagen architecture regulates cell adhesion through degradability, thereby controlling metabolic and oxidative stress
DO Velez, SK Ranamukhaarachchi, A Kumar, RN Modi, EW Lim, ...
Integrative Biology 11 (5), 221-234, 2019
442019
NAC1 is an actin-binding protein that is essential for effective cytokinesis in cancer cells
KL Yap, SI Fraley, MM Thiaville, N Jinawath, K Nakayama, J Wang, ...
Cancer research 72 (16), 4085-4096, 2012
392012
Interpretation of cancer mutations using a multiscale map of protein systems
F Zheng, MR Kelly, DJ Ramms, ML Heintschel, K Tao, B Tutuncuoglu, ...
Science 374 (6563), eabf3067, 2021
362021
Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space
KE Scott, K Rychel, S Ranamukhaarachchi, P Rangamani, SI Fraley
Acta biomaterialia 96, 81-98, 2019
212019
Can rubrics combat gender bias in faculty hiring?
M Blair-Loy, OV Mayorova, PC Cosman, SI Fraley
Science 377 (6601), 35-37, 2022
162022
Improving quantitative power in digital PCR through digital high-resolution melting
A Aralar, Y Yuan, K Chen, Y Geng, D Ortiz Velez, M Sinha, SM Lawrence, ...
Journal of clinical microbiology 58 (6), 10.1128/jcm. 00325-20, 2020
152020
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