Ivan Protsyuk
Ivan Protsyuk
Software engineer, Isomorphic Labs
Verified email at
Cited by
Cited by
A clinically applicable approach to continuous prediction of future acute kidney injury
N Tomašev, X Glorot, JW Rae, M Zielinski, H Askham, A Saraiva, ...
Nature 572 (7767), 116-119, 2019
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
Bioactivity-based molecular networking for the discovery of drug leads in natural product bioassay-guided fractionation
LF Nothias, M Nothias-Esposito, R Da Silva, M Wang, I Protsyuk, Z Zhang, ...
Journal of natural products 81 (4), 758-767, 2018
Three-dimensional microbiome and metabolome cartography of a diseased human lung
N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ...
Cell host & microbe 22 (5), 705-716. e4, 2017
3D molecular cartography using LC–MS facilitated by Optimus and'ili software
I Protsyuk, AV Melnik, LF Nothias, L Rappez, P Phapale, AA Aksenov, ...
Nature protocols 13 (1), 134-154, 2018
Meta-mass shift chemical profiling of metabolomes from coral reefs
AC Hartmann, D Petras, RA Quinn, I Protsyuk, FI Archer, E Ransome, ...
Proceedings of the National Academy of Sciences 114 (44), 11685-11690, 2017
Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples
AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ...
Analytical chemistry 89 (14), 7549-7559, 2017
Use of deep learning to develop continuous-risk models for adverse event prediction from electronic health records
N Tomašev, N Harris, S Baur, A Mottram, X Glorot, JW Rae, M Zielinski, ...
Nature Protocols 16 (6), 2765-2787, 2021
Mass spectrometry-based visualization of molecules associated with human habitats
D Petras, LF Nothias, RA Quinn, T Alexandrov, N Bandeira, A Bouslimani, ...
Analytical chemistry 88 (22), 10775-10784, 2016
Creating a 3D microbial and chemical snapshot of a human habitat
CA Kapono, JT Morton, A Bouslimani, AV Melnik, K Orlinsky, TL Knaan, ...
Scientific reports 8 (1), 3669, 2018
Concept-based model explanations for electronic health records
D Mincu, E Loreaux, S Hou, S Baur, I Protsyuk, M Seneviratne, A Mottram, ...
Proceedings of the Conference on Health, Inference, and Learning, 36-46, 2021
Molecular and microbial microenvironments in chronically diseased lungs associated with cystic fibrosis
AV Melnik, Y Vázquez-Baeza, AA Aksenov, E Hyde, AC McAvoy, M Wang, ...
Msystems 4 (5), 10.1128/msystems. 00375-19, 2019
Multitask prediction of organ dysfunction in the intensive care unit using sequential subnetwork routing
S Roy, D Mincu, E Loreaux, A Mottram, I Protsyuk, N Harris, Y Xue, ...
Journal of the American Medical Informatics Association 28 (9), 1936-1946, 2021
Program complex SNP-MED for analysis of single-nucleotide polymorphism (SNP) effects on the function of genes associated with socially significant diseases
NL Podkolodnyy, DA Afonnikov, YY Vaskin, LO Bryzgalov, VA Ivanisenko, ...
Russian Journal of Genetics: Applied Research 4, 159-167, 2014
Shared bioinformatics databases within the Unipro UGENE platform
IV Protsyuk, GA Grekhov, AV Tiunov, MY Fursov
Journal of Integrative Bioinformatics (JIB) 12 (1), 24-34, 2015
Boosting the interpretability of clinical risk scores with intervention predictions
E Loreaux, K Yu, J Kemp, M Seneviratne, C Chen, S Roy, I Protsyuk, ...
arXiv preprint arXiv:2207.02941, 2022
Prediction of future adverse health events using neural networks by pre-processing input sequences to include presence features
N Tomasev, X Glorot, JW Rae, M Zielinski, A Mottram, H Askham, ...
US Patent 11,302,446, 2022
Concept-based model explanations for Electronic Health Records
S Baur, S Hou, E Loreaux, D Mincu, A Mottram, I Protsyuk, N Tomasev, ...
arXiv e-prints, arXiv: 2012.02308, 2020
Metabolomic diversity and diversification on coral reefs
AC Hartmann, EJ Ransome, D Petras, D Cahyani, A Wahyu, R Quinn, ...
2018 Ocean Sciences Meeting, 2018
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