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Enis Afgan
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
44652018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
2622020
Dissemination of scientific software with Galaxy ToolShed
D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ...
Genome biology 15 (2), 1-3, 2014
2322014
Scalable distributed computing hierarchy: Cloud, fog and dew computing
K Skala, D Davidovic, E Afgan, I Sovic, Z Sojat
Open Journal of Cloud Computing (OJCC) 2 (1), 16-24, 2015
2222015
Galaxy CloudMan: delivering cloud compute clusters
E Afgan, D Baker, N Coraor, B Chapman, A Nekrutenko, J Taylor
BMC bioinformatics 11 (12), 1-6, 2010
2212010
Harnessing cloud computing with Galaxy Cloud
E Afgan, D Baker, N Coraor, H Goto, IM Paul, KD Makova, A Nekrutenko, ...
Nature biotechnology 29 (11), 972-974, 2011
1332011
Genomics virtual laboratory: a practical bioinformatics workbench for the cloud
E Afgan, C Sloggett, N Goonasekera, I Makunin, D Benson, M Crowe, ...
PloS one 10 (10), e0140829, 2015
1162015
Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study
H Goto, B Dickins, E Afgan, IM Paul, J Taylor, KD Makova, A Nekrutenko
Genome biology 12 (6), 1-16, 2011
1162011
BioBlend: automating pipeline analyses within Galaxy and CloudMan
C Sloggett, N Goonasekera, E Afgan
Bioinformatics 29 (13), 1685-1686, 2013
872013
CloudMan as a platform for tool, data, and analysis distribution
E Afgan, B Chapman, J Taylor
BMC bioinformatics 13, 1-7, 2012
592012
Community-driven development for computational biology at Sprints, Hackathons and Codefests
S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ...
BMC bioinformatics 15, 1-7, 2014
462014
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ...
Cell Genomics 2 (1), 2022
392022
Grü ning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. 2016
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Cˇech, ...
The Galaxy platform for accessible, reproducible and collaborative …, 2016
392016
Galaxy: A gateway to tools in e-science
E Afgan, J Goecks, D Baker, N Coraor, ...
Guide to e-science: next generation scientific research and discovery, 145-177, 2011
372011
Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy
E Afgan, B Chapman, M Jadan, V Franke, J Taylor
Current protocols in bioinformatics 38 (1), 11.9. 1-11.9. 20, 2012
362012
Role of the Resource Broker in the Grid
E Afgan
Proceedings of the 42nd annual Southeast regional conference, 299-300, 2004
302004
Bio-Docklets: virtualization containers for single-step execution of NGS pipelines
B Kim, T Ali, C Lijeron, E Afgan, K Krampis
GigaScience 6 (8), gix048, 2017
212017
Dynamic BLAST–a grid enabled BLAST
E Afgan, P Bangalore
The International Journal of Computer Science and Network Security 9 (4 …, 2009
202009
Embarrassingly parallel jobs are not embarrassingly easy to schedule on the grid
E Afgan, P Bangalore
2008 Workshop on Many-Task Computing on Grids and Supercomputers, 1-10, 2008
182008
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
162022
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