Aidan MacNamara
Aidan MacNamara
Senior Data Scientist, Bayer
Verified email at bayer.com
Title
Cited by
Cited by
Year
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms
C Terfve, T Cokelaer, D Henriques, A MacNamara, E Goncalves, ...
BMC systems biology 6 (1), 1-14, 2012
1742012
HLA class I binding of HBZ determines outcome in HTLV-1 infection
A MacNamara, A Rowan, S Hilburn, U Kadolsky, H Fujiwara, K Suemori, ...
PLoS Pathog 6 (9), e1001117, 2010
1302010
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
JA Egea, D Henriques, T Cokelaer, AF Villaverde, A MacNamara, ...
BMC bioinformatics 15 (1), 136, 2014
1092014
State–time spectrum of signal transduction logic models
A MacNamara, C Terfve, D Henriques, BP Bernabé, J Saez-Rodriguez
Physical biology 9 (4), 045003, 2012
732012
KIR2DL2 enhances protective and detrimental HLA class I-mediated immunity in chronic viral infection
NKS Al Basatena, A MacNamara, AM Vine, CL Thio, J Astemborski, ...
PLoS Pathog 7 (10), e1002270, 2011
682011
In vivo expression of human T-lymphotropic virus type 1 basic leucine-zipper protein generates specific CD8+ and CD4+ T-lymphocyte responses that correlate with clinical outcome
S Hilburn, A Rowan, MA Demontis, A MacNamara, B Asquith, ...
Journal of Infectious Diseases 203 (4), 529-536, 2011
612011
The avidity and lytic efficiency of the CTL response to HTLV-1
T Kattan, A MacNamara, AG Rowan, H Nose, AJ Mosley, Y Tanaka, ...
The Journal of Immunology 182 (9), 5723-5729, 2009
572009
A rapidly reversible chemical dimerizer system to study lipid signaling in living cells
S Feng, V Laketa, F Stein, A Rutkowska, A MacNamara, S Depner, ...
Angewandte Chemie 126 (26), 6838-6841, 2014
542014
T-cell epitope prediction: rescaling can mask biological variation between MHC molecules
A MacNamara, U Kadolsky, CRM Bangham, B Asquith
PLoS Comput Biol 5 (3), e1000327, 2009
372009
PIP3 induces the recycling of receptor tyrosine kinases
V Laketa, S Zarbakhsh, A Traynor-Kaplan, A MacNamara, ...
Science signaling 7 (308), ra5-ra5, 2014
342014
Modeling signaling networks to advance new cancer therapies
J Saez-Rodriguez, A MacNamara, S Cook
Annual review of biomedical engineering 17, 143-163, 2015
272015
In contrast to HIV, KIR3DS1 does not influence outcome in HTLV-1 retroviral infection
GM O’Connor, NKS Al Basatena, V Olavarria, A MacNamara, A Vine, ...
Human immunology 73 (8), 783-787, 2012
102012
Modeling signaling networks with different formalisms: A preview
A MacNamara, D Henriques, J Saez-Rodriguez
In Silico Systems Biology, 89-105, 2013
52013
A single-cell model of PIP3 dynamics using chemical dimerization
A MacNamara, F Stein, S Feng, C Schultz, J Saez-Rodriguez
Bioorganic & medicinal chemistry 23 (12), 2868-2876, 2015
32015
Frequency and function of KIR+ CD8+ T cells in HTLV-1 infection
K Twigger, A Rowan, NKS al Basatena, A MacNamara, C Retiere, ...
Retrovirology 11 (S1), P79, 2014
22014
An IFN-γ ELISPOT assay with two CTL epitopes derived from HTLV-1 Tax region 161-233 discriminates HAM/TSP patients from asymptomatic HTLV-1 carriers in a Peruvian population.
I Best, G López, M Talledo, A Macnamara, K Verdonck, E González, ...
AIDS research and human retroviruses, 2011
2*2011
PIP₃ induces the recycling of receptor tyrosine kinases
V Laketa
Science signaling 7, 0
2
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data with CellNOptR
C Terfve, T Cokelaer, A MacNamara, J Saez-Rodriguez
12013
Network and pathway expansion of genetic disease associations identifies successful drug targets
A MacNamara, N Nakic, M Hurle, K Guo, K Sieber, A Amin, A Gutteridge
bioRxiv, 2020
2020
A systematic approach integrating genetics, computational biology, chemical genomics and gene editing to identify novel targets in the Type I interferon signaling pathway for …
X Zeng, A MacNamara, Q Xie, Q Lu, W Hou, Y Rao, K Maratuo, C Rea, ...
The Journal of Immunology 200 (1 Supplement), 170.2-170.2, 2018
2018
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