| SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis D Wendisch, O Dietrich, T Mari, S von Stillfried, IL Ibarra, M Mittermaier, ... Cell 184 (26), 6243-6261. e27, 2021 | 311 | 2021 |
| Squidpy: a scalable framework for spatial omics analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... Nature Methods, 1-8, 2022 | 308 | 2022 |
| Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics, 1-23, 2023 | 206 | 2023 |
| An integrated cell atlas of the lung in health and disease L Sikkema, C Ramírez-Suástegui, DC Strobl, TE Gillett, L Zappia, ... Nature Medicine, 1-15, 2023 | 187* | 2023 |
| Predicting cellular responses to complex perturbations in high‐throughput screens M Lotfollahi, A Klimovskaia Susmelj, C De Donno, L Hetzel, Y Ji, IL Ibarra, ... Molecular Systems Biology, e11517, 2023 | 86* | 2023 |
| Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions IL Ibarra, NM Hollmann, B Klaus, S Augsten, B Velten, J Hennig, ... Nature Communications 11 (1), 1-16, 2020 | 60 | 2020 |
| Parkinson's disease motor symptoms rescue by CRISPRa‐reprogramming astrocytes into GABAergic neurons J Giehrl‐Schwab, F Giesert, B Rauser, CL Lao, S Hembach, S Lefort, ... EMBO Molecular Medicine, e14797, 2022 | 31 | 2022 |
| Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements IL Ibarra, VS Ratnu, L Gordillo, IY Hwang, L Mariani, K Weinand, ... Molecular Systems Biology 18 (8), e10473, 2022 | 10 | 2022 |
| Sparsity in Continuous-Depth Neural Networks H Aliee, T Richter, M Solonin, I Ibarra, F Theis, N Kilbertus Advances in Neural Information Processing Systems 35, 901-914, 2022 | 8 | 2022 |
| Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming IL Ibarra, F Melo Bioinformatics 26 (13), 1664-1665, 2010 | 8 | 2010 |
| MYT1L haploinsufficiency in human neurons and mice causes autism-associated phenotypes that can be reversed by genetic and pharmacologic intervention B Weigel, JF Tegethoff, SD Grieder, B Lim, B Nagarajan, YC Liu, ... Molecular Psychiatry, 1-14, 2023 | 7 | 2023 |
| Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner FI Gutiérrez, F Rodriguez-Valenzuela, IL Ibarra, DP Devos, F Melo BMC bioinformatics 17 (1), 1-13, 2016 | 5 | 2016 |
| APOBEC2 is a Transcriptional Repressor required for proper Myoblast Differentiation JP Lorenzo, L Molla, IL Ibarra, S Ruf, J Ridani, PG Subramani, J Boulais, ... | 4 | 2020 |
| Single cell atlas of the human retina J Li, J Wang, X Cheng, I Ibarra, M Luecken, Q Liang, F Theis, ... Investigative Ophthalmology & Visual Science 64 (8), 3268-3268, 2023 | 1 | 2023 |
| APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation JP Lorenzo, L Molla, EM Amro, IL Ibarra, S Ruf, C Neber, C Gkougkousis, ... Proceedings of the National Academy of Sciences 121 (17), e2312330121, 2024 | | 2024 |
| Integrated multi-omics single cell atlas of the human retina J Li, J Wang, IL Ibarra, X Cheng, MD Luecken, J Lu, A Monavarfeshani, ... bioRxiv, 2023.11. 07.566105, 2023 | | 2023 |
| Integrative modeling of Transcription Factor cooperativity and its effects on phenotypic variability I Ibarra Del Río | | 2020 |
| A new model for predicting DNA flexibility from a nucleotide sequence Nombre del Congreso: XXXIX Reunion Anual de la Sociedad de Bioquimica y Biologia Molecular N Rodriguez-Muxica, J Cares, F Rodríguez-Valenzuela, IL Ibarra, ... | | 2016 |
| Modelamiento comparativo tridimensional de ADN en doble hebra vía satisfacción de restricciones geométricas espaciales II Del Río Pontificia Universidad Católica de Chile., 2013 | | 2013 |
