Rafael A Irizarry
Rafael A Irizarry
Professor, Biostatistics and Computational Biology, Dana-Farber and Harvard
Verified email at - Homepage
Cited by
Cited by
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ...
Genome biology 5, 1-16, 2004
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
RA Irizarry, B Hobbs, F Collin, YD Beazer‐Barclay, KJ Antonellis, U Scherf, ...
Biostatistics 4 (2), 249-264, 2003
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
BM Bolstad, RA Irizarry, M Åstrand, TP Speed
Bioinformatics 19 (2), 185-193, 2003
Salmon provides fast and bias-aware quantification of transcript expression
R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford
Nature methods 14 (4), 417-419, 2017
Summaries of Affymetrix GeneChip probe level data
RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
Nucleic acids research 31 (4), e15-e15, 2003
affy—analysis of Affymetrix GeneChip data at the probe level
L Gautier, L Cope, BM Bolstad, RA Irizarry
Bioinformatics 20 (3), 307-315, 2004
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
MJ Aryee, AE Jaffe, H Corrada-Bravo, C Ladd-Acosta, AP Feinberg, ...
Bioinformatics 30 (10), 1363-1369, 2014
Bioinformatics and computational biology solutions using R and Bioconductor
R Gentleman, V Carey, W Huber, R Irizarry, S Dudoit
Springer Verlag, 2005
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
Epigenetic memory in induced pluripotent stem cells
K Kim, A Doi, B Wen, K Ng, R Zhao, P Cahan, J Kim, MJ Aryee, H Ji, ...
Nature 467 (7313), 285-290, 2010
The human colon cancer methylome shows similar hypo-and hypermethylation at conserved tissue-specific CpG island shores
RA Irizarry, C Ladd-Acosta, B Wen, Z Wu, C Montano, P Onyango, H Cui, ...
Nature genetics 41 (2), 178-186, 2009
A model-based background adjustment for oligonucleotide expression arrays
Z Wu, RA Irizarry, R Gentleman, F Martinez-Murillo, F Spencer
Journal of the American statistical Association 99 (468), 909-917, 2004
Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733-739, 2010
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens
W Li, H Xu, T Xiao, L Cong, MI Love, F Zhang, RA Irizarry, JS Liu, ...
Genome biology 15, 1-12, 2014
A framework for oligonucleotide microarray preprocessing
BS Carvalho, RA Irizarry
Bioinformatics 26 (19), 2363-2367, 2010
Differential methylation of tissue-and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
A Doi, IH Park, B Wen, P Murakami, MJ Aryee, R Irizarry, B Herb, ...
Nature genetics 41 (12), 1350-1353, 2009
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768-775, 2011
Multiple-laboratory comparison of microarray platforms
RA Irizarry, D Warren, F Spencer, IF Kim, S Biswal, BC Frank, ...
Nature methods 2 (5), 345-350, 2005
Accounting for cellular heterogeneity is critical in epigenome-wide association studies
AE Jaffe, RA Irizarry
Genome biology 15, 1-9, 2014
Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm
Nature communications 8 (1), 1784, 2017
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