An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 13911 | 2012 |
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012 | 5506 | 2012 |
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012 | 5300 | 2012 |
GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012 | 5189 | 2012 |
Long noncoding RNAs with enhancer-like function in human cells UA Ørom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ... Cell 143 (1), 46-58, 2010 | 1969 | 2010 |
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 768 | 2013 |
Fast computation and applications of genome mappability T Derrien, J Estellé, S Marco Sola, DG Knowles, E Raineri, R Guigó, ... PloS one 7 (1), e30377, 2012 | 569 | 2012 |
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping A Vaysse, A Ratnakumar, T Derrien, E Axelsson, G Rosengren Pielberg, ... PLoS genetics 7 (10), e1002316, 2011 | 413 | 2011 |
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome V Wucher, F Legeai, B Hédan, G Rizk, L Lagoutte, T Leeb, V Jagannathan, ... Nucleic acids research 45 (8), e57-e57, 2017 | 370 | 2017 |
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species TC Mathers, Y Chen, G Kaithakottil, F Legeai, ST Mugford, ... Genome biology 18, 1-20, 2017 | 206 | 2017 |
The long non-coding RNAs: a new (p) layer in the “dark matter” T Derrien, R Guigó, R Johnson Frontiers in genetics 2, 107, 2012 | 147 | 2012 |
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Multi-species annotation of transcriptome and chromatin structure in domesticated animals S Foissac, S Djebali, K Munyard, N Vialaneix, A Rau, K Muret, D Esquerré, ... BMC biology 17, 1-25, 2019 | 105 | 2019 |
Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules C Sessegolo, C Cruaud, C Da Silva, A Cologne, M Dubarry, T Derrien, ... Scientific reports 9 (1), 14908, 2019 | 101 | 2019 |
Third Report on Chicken Genes and Chromosomes 2015Prepared by M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ... Cytogenetic and genome research 145 (2), 78-179, 2015 | 95 | 2015 |
The origins, evolution, and functional potential of alternative splicing in vertebrates JM Mudge, A Frankish, J Fernandez-Banet, T Alioto, T Derrien, C Howald, ... Molecular biology and evolution 28 (10), 2949-2959, 2011 | 91 | 2011 |
Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping C Hitte, J Madeoy, EF Kirkness, C Priat, TD Lorentzen, F Senger, ... Nature Reviews Genetics 6 (8), 643-648, 2005 | 88 | 2005 |
Long noncoding RNA repertoire in chicken liver and adipose tissue K Muret, C Klopp, V Wucher, D Esquerré, F Legeai, F Lecerf, C Désert, ... Genetics Selection Evolution 49, 1-17, 2017 | 74 | 2017 |
Re‐annotation, improved large‐scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus A Cormier, K Avia, L Sterck, T Derrien, V Wucher, G Andres, M Monsoor, ... New Phytologist 214 (1), 219-232, 2017 | 74 | 2017 |
AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps T Derrien, C André, F Galibert, C Hitte Bioinformatics 23 (4), 498-499, 2007 | 74 | 2007 |