| Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry HC Davis, P Ramesh, A Bhatnagar, A Lee-Gosselin, JF Barry, DR Glenn, ... Nature communications 9 (1), 131, 2018 | 196 | 2018 |
| Improved online conformal prediction via strongly adaptive online learning A Bhatnagar, H Wang, C Xiong, Y Bai International Conference on Machine Learning, 2337-2363, 2023 | 60 | 2023 |
| An investigation of phone-based subword units for end-to-end speech recognition W Wang, G Wang, A Bhatnagar, Y Zhou, C Xiong, R Socher arXiv preprint arXiv:2004.04290, 2020 | 48 | 2020 |
| Learning to search via retrospective imitation J Song, R Lanka, A Zhao, A Bhatnagar, Y Yue, M Ono arXiv preprint arXiv:1804.00846, 2018 | 41 | 2018 |
| Merlion: End-to-End Machine Learning for Time Series A Bhatnagar, P Kassianik, C Liu, T Lan, W Yang, R Cassius, D Sahoo, ... Journal of Machine Learning Research 24 (226), 1-6, 2023 | 35* | 2023 |
| Towards joint sequence-structure generation of nucleic acid and protein complexes with SE (3)-discrete diffusion A Morehead, J Ruffolo, A Bhatnagar, A Madani arXiv preprint arXiv:2401.06151, 2023 | 34 | 2023 |
| Design of highly functional genome editors by modeling the universe of CRISPR-Cas sequences JA Ruffolo, S Nayfach, J Gallagher, A Bhatnagar, J Beazer, R Hussain, ... BioRxiv, 2024.04. 22.590591, 2024 | 31 | 2024 |
| Local calibration: metrics and recalibration R Luo, A Bhatnagar, Y Bai, S Zhao, H Wang, C Xiong, S Savarese, ... Uncertainty in Artificial Intelligence, 1286-1295, 2022 | 20 | 2022 |
| Mapping the microscale origins of MRI contrast with subcellular NV diamond magnetometry HC Davis, P Ramesh, A Bhatnagar, A Lee-Gosselin, JF Barry, DR Glenn, ... arXiv preprint arXiv:1610.01924, 2016 | 10 | 2016 |
| Adapting protein language models for structure-conditioned design JA Ruffolo, A Bhatnagar, J Beazer, S Nayfach, J Russ, E Hill, R Hussain, ... BioRxiv, 2024.08. 03.606485, 2024 | 6 | 2024 |
| Design of highly functional genome editors by modeling the universe of crispr‐cas sequences. bioRxiv. 2024 JA Ruffolo, S Nayfach, J Gallagher, A Bhatnagar, J Beazer, R Hussain, ... Google Scholar, 2024 | 6 | 2024 |
| Design of highly functional genome editors by modeling the universe of crispr-cas sequences. bioRxiv JA Ruffolo, S Nayfach, J Gallagher, A Bhatnagar, J Beazer, R Hussain, ... Published online, 2024 | 5 | 2024 |
| Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond HC Davis, P Ramesh, A Bhatnagar, A Lee-Gosselin, JF Barry, DR Glenn, ... Nat. Commun 9, 1-9, 2018 | 5 | 2018 |
| Conditional enzyme generation using protein language models with adapters J Yang, A Bhatnagar, JA Ruffolo, A Madani arXiv preprint arXiv:2410.03634, 2024 | 3 | 2024 |
| Voting Rules that are Unbiased but not Transitive-Symmetric A Bhatnagar Electronic Journal of Combinatorics 27 (1), 2020 | 3 | 2020 |
| Engineering of CRISPR-Cas PAM recognition using deep learning of vast evolutionary data S Nayfach, A Bhatnagar, A Novichkov, GO Estevam, N Kim, E Hill, ... bioRxiv, 2025.01. 06.631536, 2025 | | 2025 |
| Nucleases and compositions, systems, and methods thereof A Madani, JA Ruffolo, S Nayfach, A Bhatnagar, J Beazer US Patent 12,123,016, 2024 | | 2024 |
| Language Models Generate Novel Genome Editors from Scratch JA Ruffolo, S Nayfach, A Bhatnagar, J Gallagher, J Beazer, J Yip, ... MOLECULAR THERAPY 32 (4), 8-8, 2024 | | 2024 |
| Online language model interpolation for automatic speech recognition Z Al Bawab, AU Desai, S Chang, AK Agarwal, Z Romocsa, V Miljanic, ... US Patent 11,562,738, 2023 | | 2023 |
| Momentum Contrastive Autoencoder: Using Contrastive Learning for Latent Space Distribution Matching in WAE D Arpit, A Bhatnagar, H Wang, C Xiong arXiv preprint arXiv:2110.10303, 2021 | | 2021 |
