Tina Toni
Cited by
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Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
T Toni, D Welch, N Strelkowa, A Ipsen, MPH Stumpf
Journal of the Royal Society Interface 6 (31), 187-202, 2009
Simulation-based model selection for dynamical systems in systems and population biology
T Toni, MPH Stumpf
Bioinformatics 26 (1), 104-110, 2010
Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology
N Joly, C Engl, G Jovanovic, M Huvet, T Toni, X Sheng, MPH Stumpf, ...
FEMS microbiology reviews 34 (5), 797-827, 2010
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
J Liepe, P Kirk, S Filippi, T Toni, CP Barnes, MPH Stumpf
Nature protocols 9 (2), 439-456, 2014
ABC-SysBio—approximate Bayesian computation in Python with GPU support
J Liepe, C Barnes, E Cule, K Erguler, P Kirk, T Toni, MPH Stumpf
Bioinformatics 26 (14), 1797-1799, 2010
The evolution of the phage shock protein response system: interplay between protein function, genomic organization, and system function
M Huvet, T Toni, X Sheng, T Thorne, G Jovanovic, C Engl, M Buck, ...
Molecular biology and evolution 28 (3), 1141-1155, 2011
Combined model of intrinsic and extrinsic variability for computational network design with application to synthetic biology
T Toni, B Tidor
PLoS computational biology 9 (3), e1002960, 2013
Model selection in systems biology depends on experimental design
D Silk, PDW Kirk, CP Barnes, T Toni, MPH Stumpf
PLoS computational biology 10 (6), e1003650, 2014
The ABC of reverse engineering biological signalling systems
M Secrier, T Toni, MPH Stumpf
Molecular BioSystems 5 (12), 1925-1935, 2009
Parameter inference for biochemical systems that undergo a Hopf bifurcation
PDW Kirk, T Toni, MPH Stumpf
Biophysical journal 95 (2), 540-549, 2008
Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes
D Silk, PDW Kirk, CP Barnes, T Toni, A Rose, S Moon, MJ Dallman, ...
Nature communications 2 (1), 1-6, 2011
Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection
T Toni, Y Ozaki, P Kirk, S Kuroda, MPH Stumpf
Molecular BioSystems 8 (7), 1921-1929, 2012
Parameter inference and model selection in signaling pathway models
T Toni, MPH Stumpf
Computational Biology, 283-295, 2010
From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli
T Toni, G Jovanovic, M Huvet, M Buck, MPH Stumpf
BMC systems biology 5 (1), 1-16, 2011
Systems pharmacology of the NGF signaling through p75 and TrkA receptors
T Toni, P Dua, PH Van der Graaf
CPT: pharmacometrics & systems pharmacology 3 (12), 1-8, 2014
Model-based evolutionary analysis: the natural history of phage-shock stress response
M Huvet, T Toni, H Tan, G Jovanovic, C Engl, M Buck, MPH Stumpf
Biochemical Society Transactions 37 (4), 762-767, 2009
The alzheimer's disease prediction of longitudinal evolution (TADPOLE) challenge: Results after 1 year follow-up
RV Marinescu, NP Oxtoby, AL Young, EE Bron, AW Toga, MW Weiner, ...
arXiv preprint arXiv:2002.03419, 2020
Approximate Bayesian computation for parameter inference and model selection in systems biology
T Toni
Imperial College London, 2010
Tutorial on ABC rejection and ABC SMC for parameter estimation and model selection
T Toni, MPH Stumpf
arXiv preprint arXiv:0910.4472, 2009
The Machinery of Life: David S. Goodsell 2nd edn., 2009 Springer-Verlag, London
T Toni
Human Genomics 4 (5), 1-2, 2010
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