| Martini 3: a general purpose force field for coarse-grained molecular dynamics PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ... Nature methods 18 (4), 382-388, 2021 | 367 | 2021 |
| Anomalous diffusion of phospholipids and cholesterols in a lipid bilayer and its origins JH Jeon, HMS Monne, M Javanainen, R Metzler Physical review letters 109 (18), 188103, 2012 | 290 | 2012 |
| Protein crowding in lipid bilayers gives rise to non-Gaussian anomalous lateral diffusion of phospholipids and proteins JH Jeon, M Javanainen, H Martinez-Seara, R Metzler, I Vattulainen Physical Review X 6 (2), 021006, 2016 | 256 | 2016 |
| MEMBPLUGIN: studying membrane complexity in VMD R Guixà-González, I Rodriguez-Espigares, JM Ramírez-Anguita, ... Bioinformatics 30 (10), 1478-1480, 2014 | 204 | 2014 |
| Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes M Javanainen, H Hammaren, L Monticelli, JH Jeon, MS Miettinen, ... Faraday discussions 161, 397-417, 2013 | 203 | 2013 |
| Interplay of unsaturated phospholipids and cholesterol in membranes: effect of the double-bond position H Martinez-Seara, T Róg, M Pasenkiewicz-Gierula, I Vattulainen, ... Biophysical journal 95 (7), 3295-3305, 2008 | 159 | 2008 |
| Excessive aggregation of membrane proteins in the Martini model M Javanainen, H Martinez-Seara, I Vattulainen PloS one 12 (11), e0187936, 2017 | 149 | 2017 |
| Membrane cholesterol access into a G-protein-coupled receptor R Guixà-González, JL Albasanz, I Rodriguez-Espigares, M Pastor, F Sanz, ... Nature communications 8 (1), 14505, 2017 | 132 | 2017 |
| Cholesterol induces specific spatial and orientational order in cholesterol/phospholipid membranes H Martinez-Seara, T Rog, M Karttunen, I Vattulainen, R Reigada PloS one 5 (6), e11162, 2010 | 127 | 2010 |
| Membrane omega-3 fatty acids modulate the oligomerisation kinetics of adenosine A2A and dopamine D2 receptors R Guixà-González, M Javanainen, M Gómez-Soler, B Cordobilla, ... Scientific reports 6 (1), 19839, 2016 | 108 | 2016 |
| Atomistic Simulations of Functional Au144(SR)60 Gold Nanoparticles in Aqueous Environment E Heikkilä, AA Gurtovenko, H Martinez-Seara, H Häkkinen, ... The Journal of Physical Chemistry C 116 (17), 9805-9815, 2012 | 106 | 2012 |
| Accurate binding of sodium and calcium to a POPC bilayer by effective inclusion of electronic polarization J Melcr, H Martinez-Seara, R Nencini, J Kolafa, P Jungwirth, OHS Ollila The Journal of Physical Chemistry B 122 (16), 4546-4557, 2018 | 91 | 2018 |
| Nanoscale membrane domain formation driven by cholesterol M Javanainen, H Martinez-Seara, I Vattulainen Scientific reports 7 (1), 1143, 2017 | 78 | 2017 |
| Cationic Au nanoparticle binding with plasma membrane-like lipid bilayers: potential mechanism for spontaneous permeation to cells revealed by atomistic simulations E Heikkila, H Martinez-Seara, AA Gurtovenko, M Javanainen, H Hakkinen, ... The Journal of Physical Chemistry C 118 (20), 11131-11141, 2014 | 78 | 2014 |
| Effect of double bond position on lipid bilayer properties: insight through atomistic simulations H Martinez-Seara, T Róg, M Pasenkiewicz-Gierula, I Vattulainen, ... The Journal of Physical Chemistry B 111 (38), 11162-11168, 2007 | 74 | 2007 |
| Role of cardiolipins in the inner mitochondrial membrane: insight gained through atom-scale simulations T Róg, H Martinez-Seara, N Munck, M Oresic, M Karttunen, I Vattulainen The Journal of Physical Chemistry B 113 (11), 3413-3422, 2009 | 71 | 2009 |
| Diffusion of integral membrane proteins in protein-rich membranes M Javanainen, H Martinez-Seara, R Metzler, I Vattulainen The journal of physical chemistry letters 8 (17), 4308-4313, 2017 | 68 | 2017 |
| doGlycans–Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers for GROMACS R Danne, C Poojari, H Martinez-Seara, S Rissanen, F Lolicato, T Róg, ... Journal of chemical information and modeling 57 (10), 2401-2406, 2017 | 64 | 2017 |
| Influence of cis double-bond parametrization on lipid membrane properties: How seemingly insignificant details in force-field change even qualitative trends H Martinez-Seara, T Róg, M Karttunen, R Reigada, I Vattulainen The Journal of chemical physics 129 (10), 09B611, 2008 | 60 | 2008 |
| A practical guide to biologically relevant molecular simulations with charge scaling for electronic polarization E Duboue-Dijon, M Javanainen, P Delcroix, P Jungwirth, ... The Journal of Chemical Physics 153 (5), 050901, 2020 | 59 | 2020 |
Matti JavanainenPostdoctoral Researcher, Institute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
