| Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics A Leitner, T Walzthoeni, A Kahraman, F Herzog, O Rinner, M Beck, ... Molecular & Cellular Proteomics 9 (8), 1634-1649, 2010 | 569 | 2010 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 546 | 2020 |
| Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry F Herzog, A Kahraman, D Boehringer, R Mak, A Bracher, T Walzthoeni, ... Science 337 (6100), 1348-1352, 2012 | 448 | 2012 |
| Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability P Leuenberger, S Ganscha, A Kahraman, V Cappelletti, PJ Boersema, ... Science 355 (6327), eaai7825, 2017 | 392 | 2017 |
| Global analysis of protein structural changes in complex proteomes Y Feng, G De Franceschi, A Kahraman, M Soste, A Melnik, PJ Boersema, ... Nature biotechnology 32 (10), 1036-1044, 2014 | 363 | 2014 |
| Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine–lysine distances ED Merkley, S Rysavy, A Kahraman, RP Hafen, V Daggett, JN Adkins Protein science 23 (6), 747-759, 2014 | 296 | 2014 |
| Shape variation in protein binding pockets and their ligands A Kahraman, RJ Morris, RA Laskowski, JM Thornton Journal of molecular biology 368 (1), 283-301, 2007 | 274 | 2007 |
| Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons RJ Morris, RJ Najmanovich, A Kahraman, JM Thornton Bioinformatics 21 (10), 2347-2355, 2005 | 265 | 2005 |
| Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry S Schopper, A Kahraman, P Leuenberger, Y Feng, I Piazza, O Müller, ... Nature protocols 12 (11), 2391-2410, 2017 | 222 | 2017 |
| Heme proteins—diversity in structural characteristics, function, and folding LJ Smith, A Kahraman, JM Thornton Proteins: structure, function, and bioinformatics 78 (10), 2349-2368, 2010 | 196 | 2010 |
| Cross-link guided molecular modeling with ROSETTA A Kahraman, F Herzog, A Leitner, G Rosenberger, R Aebersold, ... PloS one 8 (9), e73411, 2013 | 183 | 2013 |
| Xwalk: computing and visualizing distances in cross-linking experiments A Kahraman, L Malmström, R Aebersold Bioinformatics 27 (15), 2163-2164, 2011 | 169 | 2011 |
| Statistical methods for detecting differentially methylated loci and regions MD Robinson, A Kahraman, CW Law, H Lindsay, M Nowicka, LM Weber, ... Frontiers in genetics 5, 324, 2014 | 138 | 2014 |
| xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints M Grimm, T Zimniak, A Kahraman, F Herzog Nucleic acids research 43 (W1), W362-W369, 2015 | 134 | 2015 |
| Molecular details underlying dynamic structures and regulation of the human 26S proteasome X Wang, P Cimermancic, C Yu, A Schweitzer, N Chopra, JL Engel, ... Molecular & Cellular Proteomics 16 (5), 840-854, 2017 | 109 | 2017 |
| Pathway and network analysis of more than 2500 whole cancer genomes MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ... Nature communications 11 (1), 729, 2020 | 105 | 2020 |
| The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer Cell 39 (3), 288-293, 2021 | 103 | 2021 |
| PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics A Kahraman, A Avramov, LG Nashev, D Popov, R Ternes, HD Pohlenz, ... Bioinformatics 21 (3), 418-420, 2005 | 95 | 2005 |
| Proteomics beyond large-scale protein expression analysis PJ Boersema, A Kahraman, P Picotti Current opinion in biotechnology 34, 162-170, 2015 | 79 | 2015 |
| On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins A Kahraman, RJ Morris, RA Laskowski, AD Favia, JM Thornton Proteins: Structure, Function, and Bioinformatics 78 (5), 1120-1136, 2010 | 70 | 2010 |
Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBLVerified email at ebi.ac.uk
