Utilizing automated breast cancer detection to identify spatial distributions of tumor-infiltrating lymphocytes in invasive breast cancer H Le, R Gupta, L Hou, S Abousamra, D Fassler, L Torre-Healy, RA Moffitt, ... The American journal of pathology 190 (7), 1491-1504, 2020 | 68 | 2020 |
Towards generation, management, and exploration of combined radiomics and pathomics datasets for cancer research J Saltz, J Almeida, Y Gao, A Sharma, E Bremer, T DiPrima, M Saltz, ... AMIA Summits on Translational Science Proceedings 2017, 85, 2017 | 52 | 2017 |
A containerized software system for generation, management, and exploration of features from whole slide tissue images J Saltz, A Sharma, G Iyer, E Bremer, F Wang, A Jasniewski, T DiPrima, ... Cancer research 77 (21), e79-e82, 2017 | 44 | 2017 |
MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation S Basu, E Bremer, C Zhou, DF Bogenhagen Bioinformatics 22 (4), 485-492, 2006 | 27 | 2006 |
Stony brook university covid-19 positive cases J Saltz, M Saltz, P Prasanna, R Moffitt, J Hajagos, E Bremer, J Balsamo, ... the cancer imaging archive 4, 2021 | 23 | 2021 |
PRISM: a platform for imaging in precision medicine A Sharma, L Tarbox, T Kurc, J Bona, K Smith, P Kathiravelu, E Bremer, ... JCO clinical cancer informatics 4, 491-499, 2020 | 17 | 2020 |
Federated learning for the classification of tumor infiltrating lymphocytes U Baid, S Pati, TM Kurc, R Gupta, E Bremer, S Abousamra, SP Thakur, ... arXiv preprint arXiv:2203.16622, 2022 | 9 | 2022 |
Safe “cloudification” of large images through picker APIs E Bremer, T Kurc, Y Gao, J Saltz, JS Almeida AMIA Annual Symposium Proceedings 2016, 342, 2016 | 4 | 2016 |
From EHRs to Linked Data: representing and mining encounter data for clinical expertise evaluation. C Torniai, S Essaid, C Barnes, M Conlon, S Williams, JG Hajagos, ... AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits …, 2013 | 4 | 2013 |
ImageBox 2–Efficient and rapid access of image tiles from whole-slide images using serverless HTTP range requests E Bremer, J Saltz, JS Almeida Journal of Pathology Informatics 11 (1), 29, 2020 | 3 | 2020 |
From whole slide tissues to knowledge: Mapping sub-cellular morphology of cancer T Kurc, A Sharma, R Gupta, L Hou, H Le, S Abousamra, E Bremer, ... Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries …, 2020 | 2 | 2020 |
Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows LFR Taveira, T Kurc, ACMA Melo, J Kong, E Bremer, JH Saltz, G Teodoro Journal of Digital Imaging 32, 521-533, 2019 | 2 | 2019 |
An expandable informatics framework for enhancing central cancer registries with digital pathology specimens, computational imaging tools, and advanced mining capabilities DJ Foran, EB Durbin, W Chen, E Sadimin, A Sharma, I Banerjee, T Kurc, ... Journal of Pathology Informatics 13, 100167, 2022 | 1 | 2022 |
Representing Whole Slide Cancer Image Features with Hilbert Curves E Bremer, J Almeida, J Saltz arXiv preprint arXiv:2005.06469, 2020 | 1 | 2020 |
Halcyon--A Pathology Imaging and Feature analysis and Management System E Bremer, T DiPrima, J Balsamo, J Almeida, R Gupta, J Saltz arXiv preprint arXiv:2304.10612, 2023 | | 2023 |
ImageBox3: No-Server Tile Serving to Traverse Whole Slide Images on the Web P Bhawsar, E Bremer, MA Duggan, S Chanock, M Garcia-Closas, J Saltz, ... arXiv preprint arXiv:2207.01734, 2022 | | 2022 |
Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance LFR Taveira, T Kurc, ACMA Melo, J Kong, E Bremer, JH Saltz, G Teodoro arXiv preprint arXiv:1810.02911, 2018 | | 2018 |
Integrative Informatics and Predictive Modeling Support for Population Health. MM Saltz, JH Saltz, JG Hajagos, A White, C Boicey, J Murry, I Crnosija, ... AMIA, 2015 | | 2015 |
From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer S Abousamra, E Bremer, R Birmingham, T DiPrima, N Li, F Wang, ... medicine 1, 2, 0 | | |