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Anne E. Carpenter
Anne E. Carpenter
Institute Scientist and Imaging Platform Director, Broad Institute of Harvard and MIT
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
AE Carpenter, TR Jones, MR Lamprecht, C Clarke, IH Kang, O Friman, ...
Genome biology 7 (10), 1-11, 2006
49072006
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen
J Moffat, DA Grueneberg, X Yang, SY Kim, AM Kloepfer, G Hinkle, ...
Cell 124 (6), 1283-1298, 2006
18922006
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
14052018
CellProfiler 3.0: Next-generation image processing for biology
C McQuin, A Goodman, V Chernyshev, L Kamentsky, BA Cimini, ...
PLoS biology 16 (7), e2005970, 2018
12992018
mTOR complex 1 regulates lipin 1 localization to control the SREBP pathway
TR Peterson, SS Sengupta, TE Harris, AE Carmack, SA Kang, E Balderas, ...
Cell 146 (3), 408-420, 2011
11402011
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ...
Bioinformatics 27 (8), 1179-1180, 2011
10432011
CellProfiler™: free, versatile software for automated biological image analysis
MR Lamprecht, DM Sabatini, AE Carpenter
Biotechniques 42 (1), 71-75, 2007
9612007
Biological imaging software tools
KW Eliceiri, MR Berthold, IG Goldberg, L Ibáñez, BS Manjunath, ...
Nature methods 9 (7), 697-710, 2012
5842012
Long-range directional movement of an interphase chromosome site
CH Chuang, AE Carpenter, B Fuchsova, T Johnson, P de Lanerolle, ...
Current Biology 16 (8), 825-831, 2006
5832006
CellProfiler Analyst: data exploration and analysis software for complex image-based screens
T Jones, I Kang, D Wheeler, R Lindquist, A Papallo, D Sabatini, P Golland, ...
BMC bioinformatics 9 (1), 482, 2008
5602008
In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication
AE Baltus, DB Menke, YC Hu, ML Goodheart, AE Carpenter, DG de Rooij, ...
Nature genetics 38 (12), 1430-1434, 2006
5242006
Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes
MA Bray, S Singh, H Han, CT Davis, B Borgeson, C Hartland, ...
Nature protocols 11 (9), 1757-1774, 2016
4392016
Data-analysis strategies for image-based cell profiling
JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu, C Molnar, ...
Nature methods 14 (9), 849-863, 2017
4382017
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning
TR Jones, AE Carpenter, MR Lamprecht, J Moffat, SJ Silver, JK Grenier, ...
Proceedings of the National Academy of Sciences 106 (6), 1826-1831, 2009
4212009
Annotated high-throughput microscopy image sets for validation.
V Ljosa, KL Sokolnicki, AE Carpenter
Nature methods 9 (7), 637-637, 2012
4042012
Systematic genome-wide screens of gene function
AE Carpenter, DM Sabatini
Nature Reviews Genetics 5 (1), 11-22, 2004
3942004
An algorithm-based topographical biomaterials library to instruct cell fate
HV Unadkat, M Hulsman, K Cornelissen, BJ Papenburg, ...
Proceedings of the National Academy of Sciences 108 (40), 16565-16570, 2011
3822011
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl
JC Caicedo, A Goodman, KW Karhohs, BA Cimini, J Ackerman, ...
Nature methods 16 (12), 1247-1253, 2019
3262019
Visualization of image data from cells to organisms
T Walter, DW Shattuck, R Baldock, ME Bastin, AE Carpenter, S Duce, ...
Nature methods 7 (3), S26-S41, 2010
3012010
The bromodomain protein Brd4 insulates chromatin from DNA damage signalling
SR Floyd, ME Pacold, Q Huang, SM Clarke, FC Lam, IG Cannell, ...
Nature 498 (7453), 246-250, 2013
2892013
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