Alexie Papanicolaou

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Richard LeDucBioinformatics Platform Director, Children's Hospital Research Institute of ManitobaVerified email at chrim.ca
Matthew MacManesUniversity of New HampshireVerified email at unh.edu
Manfred GrabherrSenior Researcher and Team Leader, Uppsala UniversityVerified email at imbim.uu.se
Brian HaasBroad InstituteVerified email at broadinstitute.org
Chris D. JigginsUniversity of Cambridge and Smithsonian Tropical Research Institute, PanamaVerified email at zoo.cam.ac.uk
W. Owen McMillanSmithsonian Tropical Research InstituteVerified email at si.edu
Moran YassourThe Hebrew University of JerusalemVerified email at mail.huji.ac.il
Joshua OrvisInstitute for Genome Sciences & Johns HopkinsVerified email at som.umaryland.edu
Nir FriedmanProfessor of Computer Science and Medicine, Hebrew UniversityVerified email at mail.huji.ac.il
Colin DeweyProfessor of Biostatistics and Medical Informatics, University of Wisconsin-MadisonVerified email at biostat.wisc.edu
Bo LiPrincipal Scientist, Cell and Tissue Genomics, GenentechVerified email at gene.com
David Andrew EcclesBioinformatics Research Analyst, Gringene BioinformaticsVerified email at gringene.org
Joshua C BowdenCSIROVerified email at csiro.au
Francesco StrozziEnterome BioscienceVerified email at enterome.com
Matthew Brian CougerBrigham and Women's Hospital / Harvard Medical SchoolVerified email at bwh.harvard.edu
Robert HenschelIndiana University, Technische Universität Dresden, Technical University Dresden, Dresden University of TechnologyVerified email at iu.edu
Nathalie PochetAssistant Professor, BWH/HMS/BroadVerified email at broadinstitute.org
Alisha AndersonPrinciple REsearch Scientist, CSIROVerified email at csiro.au
Wei XuSenior Lecturer in Entomology, Murdoch UniversityVerified email at Murdoch.edu.au
Mathieu JoronCNRS, Centre d'Ecologie Fonctionnelle et Evolutive, Université de MontpellierVerified email at cefe.cnrs.fr

Alexie Papanicolaou

Associate Professor, Hawkesbury Institute for the Environment, Western Sydney

Verified email at westernsydney.edu.au - Homepage

genomics entomology bioinformatics


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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013	6736	2013
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Nature 487 (7405), 94-98, 2012	1112	2012
RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design O Terenius, A Papanicolaou, JS Garbutt, I Eleftherianos, H Huvenne, ... Journal of insect physiology 57 (2), 231-245, 2011	776	2011
The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment i5K Consortium Journal of Heredity 104 (5), 595-600, 2013	327	2013
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species SL Pearce, DF Clarke, PD East, S Elfekih, KHJ Gordon, LS Jermiin, ... BMC biology 15 (1), 1-30, 2017	238	2017
Complex modular architecture around a simple toolkit of wing pattern genes SM Van Belleghem, P Rastas, A Papanicolaou, SH Martin, CF Arias, ... Nature ecology & evolution 1 (3), 0052, 2017	180	2017
Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta MR Kanost, EL Arrese, X Cao, YR Chen, S Chellapilla, MR Goldsmith, ... Insect biochemistry and molecular biology 76, 118-147, 2016	147	2016
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly … A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ... Genome biology 17, 1-31, 2016	144	2016
Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity M Joron, CD Jiggins, A Papanicolaou, WO McMillan Heredity 97 (3), 157-167, 2006	142	2006
Synteny and Chromosome Evolution in the Lepidoptera: Evidence From Mapping in Heliconius melpomene EG Pringle, SW Baxter, CL Webster, A Papanicolaou, SF Lee, CD Jiggins Genetics 177 (1), 417-426, 2007	137	2007
ButterflyBase: a platform for lepidopteran genomics A Papanicolaou, S Gebauer-Jung, ML Blaxter, W Owen McMillan, ... Nucleic Acids Research 36 (suppl_1), D582-D587, 2007	98	2007
Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus L Ferguson, SF Lee, N Chamberlain, N Nadeau, M Joron, S Baxter, ... Molecular ecology 19, 240-254, 2010	94	2010
Blue: correcting sequencing errors using consensus and context P Greenfield, K Duesing, A Papanicolaou, DC Bauer Bioinformatics 30 (19), 2723-2732, 2014	84	2014
Expansion of a bitter taste receptor family in a polyphagous insect herbivore W Xu, A Papanicolaou, HJ Zhang, A Anderson Scientific Reports 6 (1), 1-10, 2016	83	2016
Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera NY Liu, W Xu, A Papanicolaou, SL Dong, A Anderson Bmc Genomics 15 (1), 1-13, 2014	77	2014
Next generation transcriptomes for next generation genomes using est2assembly A Papanicolaou, R Stierli, DG Heckel BMC bioinformatics 10 (1), 1-16, 2009	75	2009
Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest CM Jones, A Papanicolaou, GK Mironidis, J Vontas, Y Yang, KS Lim, ... Molecular Ecology 24 (19), 4901-4911, 2015	64	2015
Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation HM Hines, R Papa, M Ruiz, A Papanicolaou, C Wang, HF Nijhout, ... BMC genomics 13 (1), 1-16, 2012	64	2012
Butterfly genomics eclosing P Beldade, WO McMillan, A Papanicolaou Heredity 100 (2), 150-157, 2008	55	2008
Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia O Leitch, A Papanicolaou, C Lennard, KP Kirkbride, A Anderson BMC genomics 16, 1-17, 2015	54	2015

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