Alexei J. Drummond

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Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Dong (Walter) XieDepartment of Computer Science, University of AucklandVerified email at cs.auckland.ac.nz
Timothy G VaughanDepartment of Biosystems Science and Engineering, ETH Zürich, SwitzerlandVerified email at bsse.ethz.ch
Joseph HeledAuckland UniversityVerified email at cs.auckland.ac.nz
Remco BouckaertVerified email at cs.auckland.ac.nz
Denise KühnertMax Planck Institute for the Science of Human HistoryVerified email at shh.mpg.de
Tanja StadlerETH ZurichVerified email at env.ethz.ch
Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Philippe LemeyAssociate Professor, KU LeuvenVerified email at kuleuven.be
Simon HoProfessor of Molecular Evolution, University of SydneyVerified email at sydney.edu.au
Beth ShapiroUC Santa Cruz Genomics Institute; Ecology and Evolutionary Biology, UC Santa CruzVerified email at ucsc.edu
Guy BaeleAssistant Professor, KU LeuvenVerified email at kuleuven.be
Allen RodrigoThe School of Biological Sciences, The University of AucklandVerified email at auckland.ac.nz
Matthew J PhillipsQueensland University of TechnologyVerified email at qut.edu.au
Chieh-Hsi WuLecturer in Statistics, University of SouthamptonVerified email at soton.ac.uk
Huw Alexander OgilvieRice UniversityVerified email at rice.edu
David WelchSenior Lecturer, Computational Evolution Group, Dept of Computer Science, University of AucklandVerified email at auckland.ac.nz
Edward C HolmesUniversity of SydneyVerified email at sydney.edu.au
Alexandra "Sasha" GavryushkinaPostdoctoral fellow at University of OtagoVerified email at otago.ac.nz

Alexei J. Drummond

Professor of Computational Biology, University of Auckland

Verified email at cs.auckland.ac.nz - Homepage

Phylogenetics Evolutionary Biology Molecular Evolution Computational Biology Computer Science


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Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data M Kearse, R Moir, A Wilson, S Stones-Havas, M Cheung, S Sturrock, ... Bioinformatics 28 (12), 1647-1649, 2012	13039	2012
BEAST: Bayesian evolutionary analysis by sampling trees A Drummond, A Rambaut BMC evolutionary biology 7 (1), 214, 2007	12037	2007
Tracer v1. 5 Available from http://beast. bio. ed. ac. uk A Rambaut, AJ Drummond Tracer, 2013	11322*	2013
Bayesian phylogenetics with BEAUti and the BEAST 1.7 AJ Drummond, MA Suchard, D Xie, A Rambaut Molecular biology and evolution 29 (8), 1969-1973, 2012	8836	2012
Relaxed phylogenetics and dating with confidence AJ Drummond, SYW Ho, MJ Phillips, A Rambaut PLoS biology 4 (5), e88, 2006	5580	2006
BEAST 2: a software platform for Bayesian evolutionary analysis R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ... PLoS Comput Biol 10 (4), e1003537, 2014	4223	2014
Geneious, version 5.4 AJ Drummond, B Ashton, S Buxton, M Cheung, A Cooper, C Duran, ... Geneious, Auckland, New Zealand, 2011	2886*	2011
Posterior summarization in Bayesian phylogenetics using Tracer 1.7 A Rambaut, AJ Drummond, D Xie, G Baele, MA Suchard Systematic biology 67 (5), 901, 2018	2776	2018
Bayesian coalescent inference of past population dynamics from molecular sequences AJ Drummond, A Rambaut, B Shapiro, OG Pybus Molecular Biology and Evolution 22 (5), 1185-1192, 2005	2762	2005
Bayesian inference of species trees from multilocus data J Heled, AJ Drummond Molecular Biology and Evolution 27 (3), 570-580, 2010	2334	2010
FigTree version 1.3. 1 [computer program] A Rambaut, AJ Drummond Website http://tree. bio. ed. ac. uk/software/figtree/, last accessed …, 2009	1368*	2009
Bayesian phylogeography finds its roots P Lemey, A Rambaut, AJ Drummond, MA Suchard PLoS computational biology 5 (9), e1000520, 2009	1334	2009
Time dependency of molecular rate estimates and systematic overestimation of recent divergence times SYW Ho, MJ Phillips, A Cooper, AJ Drummond Molecular biology and evolution 22 (7), 1561-1568, 2005	1033	2005
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 MA Suchard, P Lemey, G Baele, DL Ayres, AJ Drummond, A Rambaut Virus evolution 4 (1), vey016, 2018	1024	2018
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data AJ Drummond, GK Nicholls, AG Rodrigo, W Solomon Genetics 161 (3), 1307, 2002	1004	2002
Language phylogenies reveal expansion pulses and pauses in Pacific settlement RD Gray, AJ Drummond, SJ Greenhill Science 323 (5913), 479, 2009	729	2009
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019	721	2019
Tracer v1. 6.0 A Rambaut, MA Suchard, D Xie, AJ Drummond WWW document] URL http://beast. bio. ed. ac. uk/Tracer [accessed 30 July 2014], 2013	717*	2013
Rise and fall of the Beringian steppe bison B Shapiro, AJ Drummond, A Rambaut, MC Wilson, PE Matheus, AV Sher, ... Science 306 (5701), 1561, 2004	714	2004
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences B Shapiro, A Rambaut, AJ Drummond Molecular biology and evolution 23 (1), 7-9, 2006	689	2006

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