Yunshun Chen
Title
Cited by
Cited by
Year
edgeR: differential expression analysis of digital gene expression data User’s Guide
M Robinson, D McCarthy, Y Chen, GK Smyth
15934*2011
Voom: precision weights unlock linear model analysis tools for RNA-seq read counts
CW Law, Y Chen, W Shi, GK Smyth
Genome Biology 15 (2), R29, 2014
24012014
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
DJ McCarthy, Y Chen, GK Smyth
Nucleic acids research 40 (10), 4288-4297, 2012
21182012
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ...
Nature protocols 8 (9), 1765, 2013
9022013
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
Y Chen, ATL Lun, GK Smyth
F1000Research 5, 2016
1402016
It’s DE-licious: a recipe for differential expression analyses of RNA-seq experiments using quasi-likelihood methods in edgeR
ATL Lun, Y Chen, GK Smyth
Statistical Genomics, 391-416, 2016
1402016
Differential Expression Analysis of Complex RNA-seq Experiments Using edgeR
Y Chen, ATL Lun, GK Smyth
Statistical Analysis of Next Generation Sequencing Data, 51-74, 2014
1072014
statmod: Statistical modeling
G Smyth, Y Hu, P Dunn, B Phipson, Y Chen
R package version 1 (4), 17, 2013
99*2013
Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling
B Pal, Y Chen, F Vaillant, P Jamieson, L Gordon, AC Rios, S Wilcox, N Fu, ...
Nature communications 8 (1), 1627, 2017
642017
edgeR: differential expression analysis of digital gene expression data User’s Guide
Y Chen, D McCarthy, M Robinson, GK Smyth
UsersGuide, 2014
522014
Regulation of germinal center responses and B-cell memory by the chromatin modifier MOZ
KL Good-Jacobson, Y Chen, AK Voss, GK Smyth, T Thomas, D Tarlinton
Proceedings of the National Academy of Sciences 111 (26), 9585-9590, 2014
322014
c-Myb Regulates the T-Bet-Dependent Differentiation Program in B Cells to Coordinate Antibody Responses
D Piovesan, J Tempany, A Di Pietro, I Baas, C Yiannis, K O’Donnell, ...
Cell Reports 19 (3), 461-470, 2017
272017
Lung Basal Stem Cells Rapidly Repair DNA Damage Using the Error-Prone Nonhomologous End-Joining Pathway
CE Weeden, Y Chen, SB Ma, Y Hu, G Ramm, KD Sutherland, GK Smyth, ...
PLOS Biology 15 (1), e2000731, 2017
262017
Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits
B Pal, Y Chen, A Bert, Y Hu, JM Sheridan, T Beck, W Shi, K Satterley, ...
Breast Cancer Research 17 (1), 85, 2015
232015
Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer
D Merino, TS Weber, A Serrano, F Vaillant, K Liu, B Pal, L Di Stefano, ...
Nature communications 10 (1), 766, 2019
212019
Intraclonal plasticity in mammary tumors revealed through large-scale single-cell resolution 3d imaging
AC Rios, BD Capaldo, F Vaillant, B Pal, R van Ineveld, CA Dawson, ...
Cancer cell 35 (4), 618-632. e6, 2019
182019
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR
Y Chen, B Pal, JE Visvader, GK Smyth
F1000Research 6, 2017
182017
Statistical modeling
GK Smyth, Y Hu, P Dunn, B Phipson, Y Chen
52009
Foxp1 is indispensable for ductal morphogenesis and controls the exit of mammary stem cells from quiescence
NY Fu, B Pal, Y Chen, FC Jackling, M Milevskiy, F Vaillant, BD Capaldo, ...
Developmental cell 47 (5), 629-644. e8, 2018
42018
Package ‘statmod’
G Smyth, Y Hu, P Dunn, B Phipson, Y Chen, MG Smyth
22019
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Articles 1–20