Kentaro K. Shimizu

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Jun SeseHumanome Lab Inc.Verified email at humanome.jp
Takashi TsuchimatsuUniversity of TokyoVerified email at bs.s.u-tokyo.ac.jp
Hiroshi KudohProfessor of Plant Ecology, Center for Ecological Research, Kyoto UniversityVerified email at ecology.kyoto-u.ac.jp
Alex WidmerETH ZurichVerified email at env.ethz.ch
Tanaka KentaAssociate Professor, Sugadaira Research Station, Mountain Scince Center, University of TsukubaVerified email at sugadaira.tsukuba.ac.jp
Atsushi J. NaganoFaculty of Agriculture, Ryukoku University / IAB, Keio UniversityVerified email at agr.ryukoku.ac.jp
Masao WatanabeProfessor, Graduate School of Life Sciences, Tohoku UniversityVerified email at ige.tohoku.ac.jp
Keita SuwabeMie UniversityVerified email at bio.mie-u.ac.jp
Beat KellerProfessor for Plant Molecular Biology, University of ZurichVerified email at botinst.uzh.ch
Yasuhiro SatoAssistant Professor at the Faculty of Environmental Earth Science, Hokkaido University, JapanVerified email at ees.hokudai.ac.jp
Andrew TedderAssociate Professor in Computational Biology, University of BradfordVerified email at bradford.ac.uk
Magnus NordborgGregor Mendel Institute, Austrian Academy of SciencesVerified email at gmi.oeaw.ac.at
Christian RellstabWSL, Birmensdorf, SwitzerlandVerified email at wsl.ch
wicker thomasuniversity of ZurichVerified email at botinst.uzh.ch
Stefan ZollerETH Zurich, SwitzerlandVerified email at env.ethz.ch
Roman Volodymyr BriskineScience IT Consultant, Universität ZürichVerified email at uzh.ch
Roi Ben-DavidDepartment of Vegetables and Field crops Institute of Plant Sciences ARO-Volcani CenterVerified email at volcani.agri.gov.il
Tomoaki NishiyamaKanazawa UniversityVerified email at staff.kanazawa-u.ac.jp
Hiroyuki KakuiUniversity of TokyoVerified email at g.ecc.u-tokyo.ac.jp
chiara barbieriUniversity of CagliariVerified email at unica.it

Kentaro K. Shimizu

Professor at the University of Zurich, and Guest Professor at the Yokohama City University

Verified email at uzh.ch - Homepage

self-incompatibility polyploidy language evolution wheat genomics tropical plants


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Multiple wheat genomes reveal global variation in modern breeding S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa, J Brinton, ... Nature 588 (7837), 277-283, 2020	701	2020
Estimating genomic diversity and population differentiation–an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri MC Fischer, C Rellstab, M Leuzinger, M Roumet, F Gugerli, KK Shimizu, ... BMC genomics 18 (1), 69, 2017	307	2017
Attractive and repulsive interactions between female and male gametophytes in Arabidopsis pollen tube guidance KK Shimizu, K Okada Development 127 (20), 4511-4518, 2000	291	2000
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph T Wicker, S Oberhaensli, F Parlange, JP Buchmann, M Shatalina, ... Nature Genetics 45 (9), 1092-1096, 2013	274	2013
Diversity at the Mla Powdery Mildew Resistance Locus from Cultivated Barley Reveals Sites of Positive Selection S Seeholzer, T Tsuchimatsu, T Jordan, S Bieri, S Pajonk, W Yang, ... Molecular Plant-Microbe Interactions 23 (4), 497-509, 2010	216	2010
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism PY Novikova, N Hohmann, V Nizhynska, T Tsuchimatsu, J Ali, G Muir, ... Nature genetics 48 (9), 1077-1082, 2016	201	2016
Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species F Menardo, CR Praz, S Wyder, R Ben-David, S Bourras, H Matsumae, ... Nature Genetics 48 (2), 201-205, 2016	185	2016
Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment S Aikawa, MJ Kobayashi, A Satake, KK Shimizu, H Kudoh Proceedings of the National Academy of Sciences 107 (25), 11632, 2010	185	2010
Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene T Tsuchimatsu, K Suwabe, R Shimizu-Inatsugi, S Isokawa, P Pavlidis, ... Nature 464 (7293), 1342-1346, 2010	177	2010
Reference-guided de novo assembly approach improves genome reconstruction for related species HEL Lischer, KK Shimizu BMC bioinformatics 18 (1), 474, 2017	169	2017
Molecular basis of flowering under natural long-day conditions in Arabidopsis YH Song, A Kubota, MS Kwon, MF Covington, N Lee, ER Taagen, ... Nature Plants 4 (10), 824-835, 2018	159	2018
Evolution of selfing: recurrent patterns in molecular adaptation KK Shimizu, T Tsuchimatsu Annual Review of Ecology, Evolution, and Systematics 46, 593-622, 2015	156	2015
Evolution and control of imprinted FWA genes in the genus Arabidopsis R Fujimoto, Y Kinoshita, A Kawabe, T Kinoshita, K Takashima, ... PLoS Genetics 4 (4), e1000048, 2008	136	2008
Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia K Kubo, T Paape, M Hatakeyama, T Entani, A Takara, K Kajihara, ... Nature Plants 1 (1), 14005, 2015	130	2015
Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps MC Fischer, C Rellstab, A Tedder, S Zoller, F Gugerli, KK Shimizu, ... Molecular ecology 22 (22), 5594-5607, 2013	129	2013
The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri RIE Shimizu‐Inatsugi, J Lihova, H Iwanaga, H Kudoh, K Marhold, ... Molecular Ecology 18 (19), 4024-4048, 2009	125	2009
Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology RV Briskine, T Paape, R Shimizu‐Inatsugi, T Nishiyama, S Akama, J Sese, ... Molecular ecology resources 17 (5), 1025-1036, 2017	124	2017
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis S Akama, R Shimizu-Inatsugi, KK Shimizu, J Sese Nucleic acids research 42 (6), e46-e46, 2014	123	2014
Using knockout mutants to reveal the growth costs of defensive traits T Züst, B Joseph, KK Shimizu, DJ Kliebenstein, LA Turnbull Proceedings of the Royal Society B: Biological Sciences 278 (1718), 2598-2603, 2011	122	2011
Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop M Hatakeyama, S Aluri, MT Balachadran, SR Sivarajan, A Patrignani, ... DNA Research 25 (1), 39-47, 2018	118	2018

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