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Karissa Sanbonmatsu
Karissa Sanbonmatsu
Principal Investigator, Los Alamos National Laboratory
Verified email at lanl.gov - Homepage
Title
Cited by
Cited by
Year
α-Helical stabilization by side chain shielding of backbone hydrogen bonds
AE García, KY Sanbonmatsu
Proceedings of the National Academy of Sciences 99 (5), 2782-2787, 2002
5382002
Exploring the energy landscape of a β hairpin in explicit solvent
AE Garcia, KY Sanbonmatsu
Proteins: Structure, Function, and Bioinformatics 42 (3), 345-354, 2001
524*2001
An all‐atom structure‐based potential for proteins: bridging minimal models with all‐atom empirical forcefields
PC Whitford, JK Noel, S Gosavi, A Schug, KY Sanbonmatsu, JN Onuchic
Proteins: Structure, Function, and Bioinformatics 75 (2), 430-441, 2009
3872009
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
AH Ratje, J Loerke, A Mikolajka, M Brünner, PW Hildebrand, AL Starosta, ...
Nature 468 (7324), 713-716, 2010
3862010
SMOG@ ctbp: simplified deployment of structure-based models in GROMACS
JK Noel, PC Whitford, KY Sanbonmatsu, JN Onuchic
Nucleic acids research 38 (suppl_2), W657-W661, 2010
3402010
Simulating movement of tRNA into the ribosome during decoding
KY Sanbonmatsu, S Joseph, CS Tung
Proceedings of the National Academy of Sciences 102 (44), 15854-15859, 2005
3382005
Structure of Met‐enkephalin in explicit aqueous solution using replica exchange molecular dynamics
KY Sanbonmatsu, AE García
Proteins: Structure, Function, and Bioinformatics 46 (2), 225-234, 2002
3292002
Structural architecture of the human long non-coding RNA, steroid receptor RNA activator
IV Novikova, SP Hennelly, KY Sanbonmatsu
Nucleic acids research 40 (11), 5034-5051, 2012
2902012
Peptide folding simulations
S Gnanakaran, H Nymeyer, J Portman, KY Sanbonmatsu, AE Garcıa
Current opinion in structural biology 13 (2), 168-174, 2003
2572003
High performance computing in biology: multimillion atom simulations of nanoscale systems
KY Sanbonmatsu, CS Tung
Journal of structural biology 157 (3), 470-480, 2007
2312007
Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways
PC Whitford, P Geggier, RB Altman, SC Blanchard, JN Onuchic, ...
Rna 16 (6), 1196-1204, 2010
2102010
Free state conformational sampling of the SAM-I riboswitch aptamer domain
CD Stoddard, RK Montange, SP Hennelly, RP Rambo, KY Sanbonmatsu, ...
Structure 18 (7), 787-797, 2010
1982010
A G-rich motif in the lncRNA braveheart interacts with a zinc-finger transcription factor to specify the cardiovascular lineage
Z Xue, S Hennelly, B Doyle, AA Gulati, IV Novikova, KY Sanbonmatsu, ...
Molecular cell 64 (1), 37-50, 2016
1762016
Rise of the RNA machines: exploring the structure of long non-coding RNAs
IV Novikova, SP Hennelly, CS Tung, KY Sanbonmatsu
Journal of molecular biology 425 (19), 3731-3746, 2013
1522013
Sizing up long non-coding RNAs: do lncRNAs have secondary and tertiary structure?
IV Novikova, SP Hennelly, KY Sanbonmatsu
Bioarchitecture 2 (6), 189-199, 2012
1492012
COOLAIR antisense RNAs form evolutionarily conserved elaborate secondary structures
EJ Hawkes, SP Hennelly, IV Novikova, JA Irwin, C Dean, ...
Cell reports 16 (12), 3087-3096, 2016
1442016
Spontaneous formation of the unlocked state of the ribosome is a multistep process
JB Munro, RB Altman, CS Tung, JHD Cate, KY Sanbonmatsu, ...
Proceedings of the National Academy of Sciences 107 (2), 709-714, 2010
1382010
Navigating the ribosome's metastable energy landscape
JB Munro, KY Sanbonmatsu, CMT Spahn, SC Blanchard
Trends in biochemical sciences 34 (8), 390-400, 2009
1352009
Regulation of the mammalian elongation cycle by subunit rolling: a eukaryotic-specific ribosome rearrangement
TV Budkevich, J Giesebrecht, E Behrmann, J Loerke, DJF Ramrath, ...
Cell 158 (1), 121-131, 2014
1332014
Biomolecular dynamics: order–disorder transitions and energy landscapes
PC Whitford, KY Sanbonmatsu, JN Onuchic
Reports on Progress in Physics 75 (7), 076601, 2012
1312012
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Articles 1–20