Vladimir Gligorijevic
Vladimir Gligorijevic
Prescient Design, Genentech, Research & Early Development (gRED)
Verified email at - Homepage
Cited by
Cited by
Structure-based protein function prediction using graph convolutional networks
V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ...
Nature communications 12 (1), 3168, 2021
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Methods for biological data integration: perspectives and challenges
V Gligorijević, N Pržulj
Journal of the Royal Society Interface 12 (112), 20150571, 2015
Integrative methods for analyzing big data in precision medicine
V Gligorijević, N Malod‐Dognin, N Pržulj
Proteomics 16 (5), 741-758, 2016
deepNF: deep network fusion for protein function prediction
V Gligorijević, M Barot, R Bonneau
Bioinformatics 34 (22), 3873-3881, 2018
Non-negative matrix factorizations for multiplex network analysis
V Gligorijević, Y Panagakis, S Zafeiriou
IEEE transactions on pattern analysis and machine intelligence 41 (4), 928-940, 2018
Co-evolutionary mechanisms of emotional bursts in online social dynamics and networks
B Tadić, V Gligorijević, M Mitrović, M Šuvakov
Entropy 15 (12), 5084-5120, 2013
Fuse: multiple network alignment via data fusion
V Gligorijević, N Malod-Dognin, N Pržulj
Bioinformatics 32 (8), 1195-1203, 2016
Patient-specific data fusion for cancer stratification and personalised treatment
V Gligorijević, N Malod-Dognin, N Pržulj
Biocomputing 2016: Proceedings of the Pacific Symposium, 321-332, 2016
How the online social networks are used: dialogues-based structure of MySpace
M Šuvakov, M Mitrović, V Gligorijević, B Tadić
Journal of the Royal Society Interface 10 (79), 20120819, 2013
Integration of molecular network data reconstructs Gene Ontology
V Gligorijević, V Janjić, N Pržulj
Bioinformatics 30 (17), i594-i600, 2014
Function-guided protein design by deep manifold sampling
V Gligorijević, D Berenberg, S Ra, A Watkins, S Kelow, K Cho, R Bonneau
bioRxiv, 2021.12. 22.473759, 2021
Equifold: Protein structure prediction with a novel coarse-grained structure representation
JH Lee, P Yadollahpour, A Watkins, NC Frey, A Leaver-Fay, S Ra, K Cho, ...
Biorxiv, 2022.10. 07.511322, 2022
Sequence-structure-function relationships in the microbial protein universe
J Koehler Leman, P Szczerbiak, PD Renfrew, V Gligorijevic, D Berenberg, ...
Nature communications 14 (1), 2351, 2023
Protein remote homology detection and structural alignment using deep learning
T Hamamsy, JT Morton, R Blackwell, D Berenberg, N Carriero, ...
Nature biotechnology, 1-11, 2023
AbDiffuser: full-atom generation of in-vitro functioning antibodies
K Martinkus, J Ludwiczak, WC Liang, J Lafrance-Vanasse, I Hotzel, ...
Advances in Neural Information Processing Systems 36, 2024
Structure-based protein function prediction using graph convolutional networks. Nat Commun 12: 3168
V Gligorijevic, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ...
Structure and stability of online chat networks built on emotion-carrying links
V Gligorijević, M Skowron, B Tadić
Physica A: Statistical Mechanics and its Applications 392 (3), 538-543, 2013
Fusion and community detection in multi-layer graphs
V Gligorijević, Y Panagakis, S Zafeiriou
2016 23rd International Conference on Pattern Recognition (ICPR), 1327-1332, 2016
Protein structural alignments from sequence
JT Morton, CEM Strauss, R Blackwell, D Berenberg, V Gligorijevic, ...
BioRxiv, 2020.11. 03.365932, 2020
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