Charles Bergeron
Charles Bergeron
Assistant Professor
Verified email at rpi.edu - Homepage
Title
Cited by
Cited by
Year
RS-predictor: a new tool for predicting sites of cytochrome P450-mediated metabolism applied to CYP 3A4
J Zaretzki, C Bergeron, P Rydberg, T Huang, KP Bennett, CM Breneman
Journal of chemical information and modeling 51 (7), 1667-1689, 2011
902011
RS-Predictor models augmented with SMARTCyp reactivities: robust metabolic regioselectivity predictions for nine CYP isozymes
J Zaretzki, P Rydberg, C Bergeron, KP Bennett, L Olsen, CM Breneman
Journal of chemical information and modeling 52 (6), 1637-1659, 2012
752012
Fast bundle algorithm for multiple-instance learning
C Bergeron, G Moore, J Zaretzki, CM Breneman, KP Bennett
IEEE Transactions on Pattern Analysis and Machine Intelligence 34 (6), 1068-1079, 2011
702011
Prediction of anterior scoliotic spinal curve from trunk surface using support vector regression
C Bergeron, F Cheriet, J Ronsky, R Zernicke, H Labelle
Engineering applications of artificial intelligence 18 (8), 973-983, 2005
432005
Multiple instance ranking
C Bergeron, J Zaretzki, C Breneman, KP Bennett
Proceedings of the 25th international conference on Machine learning, 48-55, 2008
402008
Model selection for primal SVM
G Moore, C Bergeron, KP Bennett
Machine learning 85 (1-2), 175-208, 2011
392011
RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules
J Zaretzki, C Bergeron, T Huang, P Rydberg, SJ Swamidass, ...
Bioinformatics 29 (4), 497-498, 2013
382013
Binding affinity prediction for ligands and receptors forming tautomers and ionization species: inhibition of mitogen-activated protein kinase-activated protein kinase 2 (MK2)
S Natesan, R Subramaniam, C Bergeron, S Balaz
Journal of medicinal chemistry 55 (5), 2035-2047, 2012
352012
Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells
KP Bennett, C Bergeron, E Acar, RF Klees, SL Vandenberg, B Yener, ...
BMC genomics 8 (1), 380, 2007
322007
DR-predictor: incorporating flexible docking with specialized electronic reactivity and machine learning techniques to predict CYP-mediated sites of metabolism
T Huang, J Zaretzki, C Bergeron, KP Bennett, CM Breneman
Journal of chemical information and modeling 53 (12), 3352-3366, 2013
242013
Prediction of peptide bonding affinity: kernel methods for nonlinear modeling
C Bergeron, T Hepburn, CM Sundling, M Krein, B Katt, N Sukumar, ...
arXiv preprint arXiv:1108.5397, 2011
102011
Nonsmooth bilevel programming for hyperparameter selection
GM Moore, C Bergeron, KP Bennett
2009 IEEE International Conference on Data Mining Workshops, 374-381, 2009
92009
Exploiting domain knowledge for improved quantitative high-throughput screening curve fitting
C Bergeron, G Moore, M Krein, CM Breneman, KP Bennett
Journal of chemical information and modeling 51 (11), 2808-2820, 2011
62011
Big Data access and infrastructure for modern biology: case studies in data repository utility
NC Boles, T Stone, C Bergeron, TR Kiehl
Annals of the New York Academy of Sciences 1387 (1), 112-123, 2017
32017
Modeling choices for virtual screening hit identification
C Bergeron, M Krein, G Moore, CM Breneman, KP Bennett
Molecular informatics 30 (9), 765-777, 2011
32011
Robust prediction of three-dimensional spinal curve from back surface for non-invasive follow-up of scoliosis
C Bergeron, H Labelle, J Ronsky, R Zernicke
Medical Imaging 2005: Visualization, Image-Guided Procedures, and Display …, 2005
22005
Advanced treatment monitoring for olympic-level athletes using unsupervised modeling techniques
JA Siedlik, C Bergeron, M Cooper, R Emmons, W Moreau, D Nabhan, ...
Journal of athletic training 51 (1), 74-81, 2016
12016
A novel method for predicting ligand regioselectivity to metabolism by cyp p450 enzymes
J Zaretzki, C Bergeron, K Bennett, CM Breneman
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 237, 2009
12009
Visualizing spike activity during neuronal network development
N Vachon, TR Kiehl, C Bergeron
BMC neuroscience 15 (S1), P209, 2014
2014
Best practices for avoiding dominant experimental bias in analysis of multielectrode array signals
T Stone, U Khawaja, N Perko, TR Kiehl, C Bergeron
BMC neuroscience 15 (S1), P208, 2014
2014
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Articles 1–20