Ivo Hofacker

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	All	Since 2016
Citations	33936	11513
h-index	70	44
i10-index	164	116

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Co-authors

Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Christoph FlammAssociate Professor, Department of Theoretical Chemistry, University of ViennaVerified email at univie.ac.at
Ronny LorenzVerified email at tbi.univie.ac.at
Christian Höner zu SiederdissenUniversität LeipzigVerified email at bioinf.uni-leipzig.de
Stefan WashietlComputer Science and Artificial Intelligence Lab, MITVerified email at mit.edu
Andreas R. GruberPaperpile LLCVerified email at paperpile.com
Sebastian WillResearcher, Bioinformatics, TBI, University of ViennaVerified email at tbi.univie.ac.at
Michael T. WolfingerDepartment of Theoretical Chemistry, University of ViennaVerified email at univie.ac.at
Walter FontanaProfessor of Systems Biology, Harvard Medical SchoolVerified email at hms.harvard.edu
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Kristin Reiche (nee Missal)Head of Bioinformatics Research Unit, Fraunhofer Institute for Cell Therapy and Immunology, LeipzigVerified email at izi.fraunhofer.de
Philipp Kapranov, PhDHuaqiao UniversityVerified email at hqu.edu.cn
Axel MosigRuhr University BochumVerified email at bph.rub.de
Sebastian BonhoefferTheoretical Biology, ETH ZurichVerified email at env.ethz.ch
Pavel KovarikProfessor of Immunobiology, University of Vienna, Max F. Perutz LaboratoriesVerified email at univie.ac.at
Florian EggenhoferBioinformatics Group, Department of Computer Science, Albert-Ludwigs-University FreiburgVerified email at informatik.uni-freiburg.de
Erich Bornberg-BauerProfessor of Molecular Evolution and Bioinformatics, University of muenster, GermanyVerified email at uni-muenster.de
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Stefan Ernst SeemannUniversity of CopenhagenVerified email at rth.dk

Ivo Hofacker

University of Vienna

Verified email at tbi.univie.ac.at - Homepage


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ENCODE Project Consortium nature 447 (7146), 799, 2007	5260	2007
Fast folding and comparison of RNA secondary structures IL Hofacker, W Fontana, PF Stadler, LS Bonhoeffer, M Tacker, P Schuster Monatshefte für Chemie/Chemical Monthly 125 (2), 167-188, 1994	2601	1994
ViennaRNA Package 2.0 R Lorenz, SH Bernhart, CH Zu Siederdissen, H Tafer, C Flamm, ... Algorithms for molecular biology 6 (1), 1-14, 2011	2596	2011
RNA maps reveal new RNA classes and a possible function for pervasive transcription P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ... Science 316 (5830), 1484-1488, 2007	2324	2007
Vienna RNA secondary structure server IL Hofacker Nucleic acids research 31 (13), 3429-3431, 2003	2301	2003
The vienna RNA websuite AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker Nucleic acids research 36 (suppl_2), W70-W74, 2008	1507	2008
From sequences to shapes and back: a case study in RNA secondary structures P Schuster, W Fontana, PF Stadler, IL Hofacker Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1994	956	1994
Fast and reliable prediction of noncoding RNAs S Washietl, IL Hofacker, PF Stadler Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005	788	2005
Secondary structure prediction for aligned RNA sequences IL Hofacker, M Fekete, PF Stadler Journal of molecular biology 319 (5), 1059-1066, 2002	752	2002
Complete suboptimal folding of RNA and the stability of secondary structures S Wuchty, W Fontana, IL Hofacker, P Schuster Biopolymers: Original Research on Biomolecules 49 (2), 145-165, 1999	668	1999
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen PLoS Comput Biol 3 (4), e65, 2007	502	2007
RNAalifold: improved consensus structure prediction for RNA alignments SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler BMC bioinformatics 9 (1), 1-13, 2008	500	2008
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler Nature biotechnology 23 (11), 1383-1390, 2005	446	2005
RNA folding at elementary step resolution. C Flamm, W Fontana, IL Hofacker, P Schuster Rna 6 (3), 325-338, 2000	366	2000
Thermodynamics of RNA–RNA binding U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ... Bioinformatics 22 (10), 1177-1182, 2006	357	2006
RNA folding and combinatory landscapes W Fontana, PF Stadler, EG Bornberg-Bauer, T Griesmacher, IL Hofacker, ... Physical review E 47 (3), 2083, 1993	348	1993
The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7 (1), 1-15, 2006	323	2006
Alignment of RNA base pairing probability matrices IL Hofacker, SHF Bernhart, PF Stadler Bioinformatics 20 (14), 2222-2227, 2004	282	2004
RNAplex: a fast tool for RNA–RNA interaction search H Tafer, IL Hofacker Bioinformatics 24 (22), 2657-2663, 2008	280	2008
Oxygen and proton pathways in cytochrome c oxidase I Hofacker, K Schulten Proteins: Structure, Function, and Bioinformatics 30 (1), 100-107, 1998	273	1998

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