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Steven K Reilly
Steven K Reilly
Yale University Genetics Dept
Verified email at yale.edu - Homepage
Title
Cited by
Cited by
Year
Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism
AJ Willsey, SJ Sanders, M Li, S Dong, AT Tebbenkamp, RA Muhle, ...
Cell 155 (5), 997-1007, 2013
9382013
Direct identification of hundreds of expression-modulating variants using a multiplexed reporter assay
R Tewhey, D Kotliar, DS Park, B Liu, S Winnicki, SK Reilly, KG Andersen, ...
Cell 165 (6), 1519-1529, 2016
4452016
The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment
J Cotney, RA Muhle, SJ Sanders, L Liu, AJ Willsey, W Niu, W Liu, L Klei, ...
Nature communications 6 (1), 6404, 2015
3512015
Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events
JE Lemieux, KJ Siddle, BM Shaw, C Loreth, SF Schaffner, ...
Science 371 (6529), eabe3261, 2021
290*2021
Evolutionary changes in promoter and enhancer activity during human corticogenesis
SK Reilly, J Yin, AE Ayoub, D Emera, J Leng, J Cotney, R Sarro, P Rakic, ...
Science 347 (6226), 1155-1159, 2015
2792015
The evolution of lineage-specific regulatory activities in the human embryonic limb
J Cotney, J Leng, J Yin, SK Reilly, LE DeMare, D Emera, AE Ayoub, ...
Cell 154 (1), 185-196, 2013
2462013
Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb
J Cotney, J Leng, S Oh, LE DeMare, SK Reilly, MB Gerstein, JP Noonan
Genome research 22 (6), 1069-1080, 2012
1562012
The genomic landscape of cohesin-associated chromatin interactions
LE DeMare, J Leng, J Cotney, SK Reilly, J Yin, R Sarro, JP Noonan
Genome research 23 (8), 1224-1234, 2013
1492013
Origin and evolution of developmental enhancers in the mammalian neocortex
D Emera, J Yin, SK Reilly, J Gockley, JP Noonan
Proceedings of the National Academy of Sciences 113 (19), E2617-E2626, 2016
942016
Genome-wide functional screen of 3′ UTR variants uncovers causal variants for human disease and evolution
D Griesemer, JR Xue, SK Reilly, JC Ulirsch, K Kukreja, JR Davis, M Kanai, ...
Cell 184 (20), 5247-5260. e19, 2021
822021
Massively parallel discovery of human-specific substitutions that alter enhancer activity
S Uebbing, J Gockley, SK Reilly, AA Kocher, E Geller, N Gandotra, ...
Proceedings of the National Academy of Sciences 118 (2), e2007049118, 2021
81*2021
Evolutionary constraint and innovation across hundreds of placental mammals
MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ...
Science 380 (6643), eabn3943, 2023
632023
Evolution of gene regulation in humans
SK Reilly, JP Noonan
Annual review of genomics and human genetics 17, 45-67, 2016
572016
Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak
KJ Siddle, LA Krasilnikova, GK Moreno, SF Schaffner, J Vostok, ...
Cell 185 (3), 485-492. e10, 2022
53*2022
Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR–FlowFISH
SK Reilly, SJ Gosai, A Gutierrez, A Mackay-Smith, JC Ulirsch, M Kanai, ...
Nature genetics 53 (8), 1166-1176, 2021
49*2021
Insights from complex trait fine-mapping across diverse populations
M Kanai, JC Ulirsch, J Karjalainen, M Kurki, KJ Karczewski, E Fauman, ...
MedRxiv, 2021.09. 03.21262975, 2021
472021
Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features
JP Ray, CG de Boer, CP Fulco, CA Lareau, M Kanai, JC Ulirsch, ...
Nature communications 11 (1), 1237, 2020
422020
A genomic timescale for placental mammal evolution
NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ...
Science 380 (6643), eabl8189, 2023
412023
Integrating gene annotation with orthology inference at scale
BM Kirilenko, C Munegowda, E Osipova, D Jebb, V Sharma, M Blumer, ...
Science 380 (6643), eabn3107, 2023
362023
Leveraging base-pair mammalian constraint to understand genetic variation and human disease
PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ...
Science 380 (6643), eabn2937, 2023
342023
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