Jeff Orth
Jeff Orth
Computational Biologist, X, the moonshot factory
Verified email at x.team - Homepage
Title
Cited by
Cited by
Year
What is flux balance analysis?
JD Orth, I Thiele, B Palsson
Nature biotechnology 28 (3), 245-248, 2010
26702010
Escherichia coli and Salmonella
FC Neidhardt
Typhimurium Cellular and Molecular Biology, 1987
15681987
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290, 2011
13312011
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011
JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, B Palsson
Molecular systems biology 7 (1), 535, 2011
9272011
In silico method for modelling metabolism and gene product expression at genome scale
JA Lerman, DR Hyduke, H Latif, VA Portnoy, NE Lewis, JD Orth, ...
Nature communications 3 (1), 1-10, 2012
2292012
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ...
Metabolic engineering 12 (3), 173-186, 2010
2262010
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ...
Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013
2042013
Reconstruction and use of microbial metabolic networks: the core Escherichia coli metabolic model as an educational guide
JD Orth, RMT Fleming, BO Palsson
EcoSal plus, 2010
1752010
Systematizing the generation of missing metabolic knowledge
JD Orth, B Palsson
Biotechnology and bioengineering 107 (3), 403-412, 2010
1612010
Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions
JD Orth, B Palsson
BMC systems biology 6 (1), 30, 2012
642012
EcoSal—Escherichia coli and Salmonella: cellular and molecular biology
JD Orth, RM Fleming, B Palsson
arXiv preprint arXiv:1312.5228, 2009
552009
Systems biology analysis of Escherichia coli for discovery and metabolic engineering
JD Orth
UC San Diego, 2012
62012
Genome-scale network modeling
SY Lee, SB Sohn, HU Kim, JM Park, TY Kim, JD Orth, B Palsson
Systems Metabolic Engineering, 1-23, 2012
22012
Metabolic modeling of methanotroph biocatalysts for natural gas-to-liquids bioconversion
J Orth
41st Symposium on Biotechnology for Fuels and Chemicals, 2019
2019
Reconstruction and Use of Microbial Metabolic Networks: the Core Metabolic Model as an Educational Guide
JD Orth, RMT Fleming, B Palsson
2009
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Articles 1–15