Alan Ruttenberg

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	All	Since 2016
Citations	6395	2526
h-index	26	20
i10-index	50	30

540

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405

20072008200920102011201220132014201520162017201820192020202153 188 331 455 534 527 502 540 521 539 523 466 526 440 26

Co-authors

Barry SmithProfessor of Philosophy, Biomedical Informatics, and Computer Science, University at BuffaloVerified email at buffalo.edu
Christopher J MungallLawrence Berkeley National LaboratoryVerified email at lbl.gov
Mélanie CourtotEMBL-EBIVerified email at ebi.ac.uk
Ryan BrinkmanBritish Columbia Cancer AgencyVerified email at bccrc.ca
Karen EilbeckProfessor, Biomedical Informatics, University of UtahVerified email at genetics.utah.edu
Philippe Rocca-SerraUniversity of OxfordVerified email at oerc.ox.ac.uk
Yongqun HeAssociate Professor of Lab Animal Medicine, Microbiology, Immunology, and Bioinformatics, UniversityVerified email at med.umich.edu
Susanna-Assunta SansoneUniversity of Oxford, Oxford e-Research Centre (Associate Director, Associate Professor)Verified email at oerc.ox.ac.uk
Werner CeustersUniversity at BuffaloVerified email at buffalo.edu
Richard H. ScheuermannJ. Craig Venter InstituteVerified email at jcvi.org
Darren A. NataleProtein Information Resource, Georgetown University Medical CenterVerified email at georgetown.edu
Judith BlakeProfessor of Mammalian GeneticsVerified email at jax.org
Alexander D. DiehlAssociate Professor of Biomedical Informatics, University at BuffaloVerified email at buffalo.edu
James MaloneCTO, SciBiteVerified email at scibite.com
Bijan ParsiaReader in Computer Science, University of ManchesterVerified email at manchester.ac.uk
Jonathan A ReesMITVerified email at mumble.net
Peter F. Patel-SchneiderPARCVerified email at parc.com
Ian HorrocksProfessor of Computer Science, University of OxfordVerified email at cs.ox.ac.uk
Jie ZhengUniversity of PennsylvaniaVerified email at pennmedicine.upenn.edu
Assoc.-Prof. Dr. Matthias SamwaldMedical University of ViennaVerified email at meduniwien.ac.at

Alan Ruttenberg

Director of Clinical and Translational Data Exchange, School of Dental Medicine, University at Buffalo

Verified email at buffalo.edu - Homepage

applied ontology biomedical knowledge sharing open access computational biology


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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ... Nature biotechnology 25 (11), 1251-1255, 2007	2420	2007
OWL 2 web ontology language: Structural specification and functional-style syntax B Motik, PF Patel-Schneider, B Parsia, C Bock, A Fokoue, P Haase, ... W3C Recommendation 27, 2009	973	2009
Advancing translational research with the Semantic Web A Ruttenberg, T Clark, W Bug, M Samwald, O Bodenreider, H Chen, ... BMC bioinformatics 8 (3), 1-16, 2007	329	2007
Modeling biomedical experimental processes with OBI RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ... Journal of biomedical semantics 1 (1), 1-11, 2010	296	2010
The ontology for biomedical investigations A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ... PloS one 11 (4), e0154556, 2016	180	2016
OntoFox: web-based support for ontology reuse Z Xiang, M Courtot, RR Brinkman, A Ruttenberg, Y He BMC research notes 3 (1), 1-12, 2010	173	2010
Finding our way through phenotypes AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ... PLoS Biol 13 (1), e1002033, 2015	172	2015
The SWAN biomedical discourse ontology P Ciccarese, E Wu, G Wong, M Ocana, J Kinoshita, A Ruttenberg, T Clark Journal of biomedical informatics 41 (5), 739-751, 2008	154	2008
Life sciences on the Semantic Web: the Neurocommons and beyond A Ruttenberg, JA Rees, M Samwald, MS Marshall Briefings in bioinformatics 10 (2), 193-204, 2009	136	2009
Research in computational molecular biology J Huang, Q Morris, B Frey Detecting microRNA targets by linking sequence, microRNA and gene expression …, 2006	135	2006
Ontobee: A Linked Data Server and Browser for Ontology Terms Z Xiang, C Mungall, A Ruttenberg, Y He International Conference on Biomedical Ontology, 2011	125	2011
MIREOT: the minimum information to reference an external ontology term M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ... Applied Ontology 6 (1), 23-33, 2011	124	2011
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability AD Diehl, TF Meehan, YM Bradford, MH Brush, WM Dahdul, DS Dougall, ... Journal of biomedical semantics 7 (1), 1-10, 2016	87	2016
Improvement of pubmed literature searching using biomedical ontology Z Xiang, Y He Nature Precedings, 1-1, 2009	80	2009
Protein Ontology: a controlled structured network of protein entities DA Natale, CN Arighi, JA Blake, CJ Bult, KR Christie, J Cowart, ... Nucleic acids research 42 (D1), D415-D421, 2014	79	2014
Ontobee: a linked ontology data server to support ontology term dereferencing, linkage, query and integration E Ong, Z Xiang, B Zhao, Y Liu, Y Lin, J Zheng, C Mungall, M Courtot, ... Nucleic acids research 45 (D1), D347-D352, 2017	73	2017
MIREOT: the minimum information to reference an external ontology term M Courtot, F Gibson, A Lister, J Malone, D Schober, R Brinkman, ... ICBO, 87, 2009	57	2009
Computational knowledge integration in biopharmaceutical research D Ficenec, M Osborne, J Pradines, D Richards, R Felciano, RJ Cho, ... Briefings in bioinformatics 4 (3), 260-278, 2003	52	2003
The owl of biomedical investigations M Courtot, W Bug, F Gibson, AL Lister, D Schober, RR Brinkman, ... OWLED OWL Experiences and Directions, 2008	46	2008
Edge‐count probabilities for the identification of local protein communities and their organization V Farutin, K Robison, E Lightcap, V Dancik, A Ruttenberg, S Letovsky, ... Proteins: Structure, Function, and Bioinformatics 62 (3), 800-818, 2006	43	2006

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