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Timothy G Vaughan
Timothy G Vaughan
Department of Biosystems Science and Engineering, ETH Zürich, Switzerland
Verified email at bsse.ethz.ch
Title
Cited by
Cited by
Year
BEAST 2: a software platform for Bayesian evolutionary analysis
R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ...
PLoS computational biology 10 (4), e1003537, 2014
49032014
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
13732019
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ...
Nature 595 (7869), 707-712, 2021
3112021
A Bayesian model predicts the response of axons to molecular gradients
D Mortimer, J Feldner, T Vaughan, I Vetter, Z Pujic, WJ Rosoff, K Burrage, ...
Proceedings of the National Academy of Sciences 106 (25), 10296-10301, 2009
1112009
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
Journal of the Royal Society Interface 11 (94), 20131106, 2014
1092014
Efficient Bayesian inference under the structured coalescent
TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond
Bioinformatics 30 (16), 2272-2279, 2014
1012014
Einstein-Podolsky-Rosen entanglement strategies in two-well Bose-Einstein condensates
QY He, MD Reid, TG Vaughan, C Gross, M Oberthaler, PD Drummond
Physical review letters 106 (12), 120405, 2011
962011
Phylodynamics with migration: a computational framework to quantify population structure from genomic data
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
Molecular biology and evolution 33 (8), 2102-2116, 2016
932016
Axon guidance by growth-rate modulation
D Mortimer, Z Pujic, T Vaughan, AW Thompson, J Feldner, I Vetter, ...
Proceedings of the National Academy of Sciences 107 (11), 5202-5207, 2010
772010
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
652018
IcyTree: rapid browser-based visualization for phylogenetic trees and networks
TG Vaughan
Bioinformatics 33 (15), 2392-2394, 2017
642017
Reproductive number of the COVID-19 epidemic in Switzerland with a focus on the Cantons of Basel-Stadt and Basel-Landschaft
J Scire, SA Nadeau, T Vaughan, B Gavin, S Fuchs, J Sommer, KN Koch, ...
Swiss medical weekly 150 (19-20), w20271, 2020
622020
The origin and early spread of SARS-CoV-2 in Europe
SA Nadeau, TG Vaughan, J Scire, JS Huisman, T Stadler
Proceedings of the National Academy of Sciences 118 (9), 2021
572021
A stochastic simulator of birth–death master equations with application to phylodynamics
TG Vaughan, AJ Drummond
Molecular biology and evolution 30 (6), 1480-1493, 2013
502013
Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial
C Pacioni, H Hunt, ME Allentoft, TG Vaughan, AF Wayne, A Baynes, ...
Molecular Ecology 24 (23), 5813-5828, 2015
372015
Estimating epidemic incidence and prevalence from genomic data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
Molecular Biology and Evolution, msz106, 2019
362019
Entanglement, number fluctuations and optimized interferometric phase measurement
QY He, TG Vaughan, PD Drummond, MD Reid
New Journal of Physics 14 (9), 093012, 2012
362012
How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?
T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, ...
Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150420, 2015
342015
Inferring ancestral recombination graphs from bacterial genomic data
TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French
Genetics 205 (2), 857-870, 2017
312017
Extinction times in autocatalytic systems
PD Drummond, TG Vaughan, AJ Drummond
The Journal of Physical Chemistry A 114 (39), 10481-10491, 2010
272010
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