Minghua Deng
Minghua Deng
School of Mathematical Science, Peking University
Verified email at - Homepage
Cited by
Cited by
Inferring domain–domain interactions from protein–protein interactions
M Deng, S Mehta, F Sun, T Chen
Genome research 12 (10), 1540-1548, 2002
Prediction of protein function using protein-protein interaction data
M Deng, K Zhang, S Mehta, T Chen, F Sun
Journal of Computational Biology 10 (6), 947-960, 2003
A dynamic programming algorithm for haplotype block partitioning
K Zhang, M Deng, T Chen, MS Waterman, F Sun
Proceedings of the National Academy of Sciences 99 (11), 7335-7339, 2002
KERNEL-BASED DATA FUSION AND ITS APPLICATION TO PROTEIN FUNCTION PREDICTION IN YEAST Online supplement at http://www. noble. gs. washington. edu/yeast.
GRG Lanckriet, M Deng, N Cristianini, MI Jordan
Proceedings of the Pacific Symposium 6, 10, 2004
Assessment of the reliability of protein-protein interactions and protein function prediction.
M Deng, F Sun, T Chen
Pacific Symposium on Biocomputing 8, 140-151, 2003
An integrated probabilistic model for functional prediction of proteins
M Deng, T Chen, F Sun
Journal of Computational Biology 11 (2-3), 463-475, 2004
Mapping Gene Ontology to proteins based on protein-protein interaction data
M Deng, Z Tu, F Sun, T Chen
Bioinformatics, 2004
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
K Song, J Ren, G Reinert, M Deng, MS Waterman, F Sun
Briefings in bioinformatics, bbt067, 2013
Research in computational molecular biology
K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun
CCLasso: correlation inference for compositional data through Lasso
H Fang, C Huang, H Zhao, M Deng
Bioinformatics, btv349, 2015
An integrated approach to the prediction of domain-domain interactions
H Lee, M Deng, F Sun, T Chen
BMC bioinformatics 7 (1), 269, 2006
A Lasso regression model for the construction of microRNA-target regulatory networks
Y Lu, Y Zhou, W Qu, M Deng, C Zhang
Bioinformatics 27 (17), 2406-2413, 2011
Diffusion kernel-based logistic regression models for protein function prediction
H Lee, Z Tu, M Deng, F Sun, T Chen
Omics: a journal of integrative biology 10 (1), 40-55, 2006
Stochastic model of yeast cell-cycle network
Y Zhang, M Qian, Q Ouyang, M Deng, F Li, C Tang
Physica D: Nonlinear Phenomena 219 (1), 35-39, 2006
Alignment-free sequence comparison based on next generation sequencing reads
K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun
Research in computational molecular biology, 272-285, 2012
Comparison of metagenomic samples using sequence signatures
B Jiang, K Song, J Ren, M Deng, F Sun, X Zhang
BMC genomics 13 (1), 730, 2012
RNA editome in rhesus macaque shaped by purifying selection
JY Chen, Z Peng, R Zhang, XZ Yang, BC Tan, H Fang, CJ Liu, M Shi, ...
PLoS Genet 10 (4), e1004274, 2014
Alignment-free sequence comparison based on next-generation sequencing reads
K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun
Journal of Computational Biology 20 (2), 64-79, 2013
Differential Network Analysis via the Lasso Penalized D-Trace Loss
H Yuan, R Xi, M Deng
arXiv preprint arXiv:1511.09188, 2015
Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array
X Hang, P Li, Z Li, W Qu, Y Yu, H Li, Z Shen, H Zheng, Y Gao, Y Wu, ...
BMC genomics 10 (1), 126, 2009
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