| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019 | 315 | 2019 |
| Pseudotime estimation: deconfounding single cell time series JE Reid, L Wernisch Bioinformatics 32 (19), 2973-2980, 2016 | 150 | 2016 |
| Metabolic regulation of pluripotency and germ cell fate through α‐ketoglutarate J Tischler, WH Gruhn, J Reid, E Allgeyer, F Buettner, C Marr, F Theis, ... The EMBO journal 38 (1), e99518, 2019 | 97 | 2019 |
| Nodal cis-regulatory elements reveal epiblast and primitive endoderm heterogeneity in the peri-implantation mouse embryo C Granier, V Gurchenkov, A Perea-Gomez, A Camus, S Ott, ... Developmental biology 349 (2), 350-362, 2011 | 62 | 2011 |
| STEME: efficient EM to find motifs in large data sets JE Reid, L Wernisch Nucleic acids research 39 (18), e126-e126, 2011 | 59 | 2011 |
| Clusternomics: Integrative context-dependent clustering for heterogeneous datasets E Gabasova, J Reid, L Wernisch PLoS computational biology 13 (10), e1005781, 2017 | 58 | 2017 |
| Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay D Shigaki, O Adato, AN Adhikari, S Dong, A Hawkins‐Hooker, F Inoue, ... Human mutation 40 (9), 1280-1291, 2019 | 52 | 2019 |
| Evolutionarily Conserved Regulatory Motifs in the Promoter of the Arabidopsis Clock Gene LATE ELONGATED HYPOCOTYL M Spensley, JY Kim, E Picot, J Reid, S Ott, C Helliwell, IA Carré The Plant Cell 21 (9), 2606-2623, 2009 | 49 | 2009 |
| Variable structure motifs for transcription factor binding sites JE Reid, KJ Evans, N Dyer, L Wernisch, S Ott BMC genomics 11, 1-18, 2010 | 36 | 2010 |
| Misclassification risk and uncertainty quantification in deep classifiers M Sensoy, M Saleki, S Julier, R Aydogan, J Reid Proceedings of the IEEE/CVF winter conference on applications of computer …, 2021 | 31 | 2021 |
| Grandmaster-level chess without search A Ruoss, G Delétang, S Medapati, J Grau-Moya, LK Wenliang, E Catt, ... arXiv e-prints, arXiv: 2402.04494, 2024 | 27 | 2024 |
| Machine learning based classification of cells into chronological stages using single-cell transcriptomics SP Singh, S Janjuha, S Chaudhuri, S Reinhardt, A Kränkel, S Dietz, ... Scientific Reports 8 (1), 17156, 2018 | 21 | 2018 |
| STEME: a robust, accurate motif finder for large data sets JE Reid, L Wernisch PloS one 9 (3), e90735, 2014 | 17 | 2014 |
| An alignment-free model for comparison of regulatory sequences H Koohy, NP Dyer, JE Reid, G Koentges, S Ott Bioinformatics 26 (19), 2391-2397, 2010 | 15 | 2010 |
| GPseudoRank: a permutation sampler for single cell orderings ME Strauß, JE Reid, L Wernisch Bioinformatics 35 (4), 611-618, 2019 | 12 | 2019 |
| Reinforcement learning for information retrieval A Kuhnle, M Aroca-Ouellette, A Basu, M Sensoy, J Reid, D Zhang Proceedings of the 44th International ACM SIGIR Conference on Research and …, 2021 | 11 | 2021 |
| Scaling instructable agents across many simulated worlds MA Raad, A Ahuja, C Barros, F Besse, A Bolt, A Bolton, B Brownfield, ... arXiv preprint arXiv:2404.10179, 2024 | 9 | 2024 |
| GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution ME Strauss, PDW Kirk, JE Reid, L Wernisch Bioinformatics 36 (5), 1484-1491, 2020 | 8 | 2020 |
| Branch-recombinant Gaussian processes for analysis of perturbations in biological time series CA Penfold, A Sybirna, JE Reid, Y Huang, L Wernisch, Z Ghahramani, ... Bioinformatics 34 (17), i1005-i1013, 2018 | 8 | 2018 |
| Nonparametric Bayesian inference of transcriptional branching and recombination identifies regulators of early human germ cell development CA Penfold, A Sybirna, J Reid, Y Huang, L Wernisch, Z Ghahramani, ... bioRxiv, 2017 | 7* | 2017 |
Lorenz WernischBIOS HealthVerified email at mrc-bsu.cam.ac.uk
