Marie-Dominique Devignes
Marie-Dominique Devignes
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HexServer: an FFT-based protein docking server powered by graphics processors
G Macindoe, L Mavridis, V Venkatraman, MD Devignes, DW Ritchie
Nucleic acids research 38 (suppl_2), W445-W449, 2010
Integrative annotation of 21,037 human genes validated by full-length cDNA clones
T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ...
PLoS Biol 2 (6), e162, 2004
IntelliGO: a new vector-based semantic similarity measure including annotation origin
S Benabderrahmane, M Smail-Tabbone, O Poch, A Napoli, MD Devignes
BMC bioinformatics 11 (1), 588, 2010
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Protein docking using case‐based reasoning
AW Ghoorah, MD Devignes, M Smaïl‐Tabbone, DW Ritchie
Proteins: Structure, Function, and Bioinformatics 81 (12), 2150-2158, 2013
The Genexpress IMAGE knowledge base of the human brain transcriptome: a prototype integrated resource for functional and computational genomics
G Piétu, R Mariage-Samson, NA Fayein, C Matingou, E Eveno, ...
Genome research 9 (2), 195-209, 1999
IMAGE: molecular integration of the analysis of the human genome and its expression
C Auffray, G Behar, F Bois, C Bouchier, CS Da, MD Devignes, S Duprat, ...
Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie 318 …, 1995
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
Many-Valued Concept Lattices for Conceptual Clustering and Information Retrieval.
N Messai, MD Devignes, A Napoli, M Smail-Tabbone
ECAI 178, 127-131, 2008
Report of the Fifth International Workshop on Human Chromosome 11 Mapping 1996.
TB Shows, M Alders, S Bennett, D Burbee, P Cartwright, ...
Cytogenetics and cell genetics 74 (1-2), 1, 1996
Application of artificial intelligence to gastroenterology and hepatology
C Le Berre, WJ Sandborn, S Aridhi, MD Devignes, L Fournier, ...
Gastroenterology 158 (1), 76-94. e2, 2020
Activation of peroxisome proliferator-activated receptor gamma by human cytomegalovirus for de novo replication impairs migration and invasiveness of cytotrophoblasts from …
B Rauwel, B Mariamé, H Martin, R Nielsen, S Allart, B Pipy, S Mandrup, ...
Journal of virology 84 (6), 2946-2954, 2010
Querying a bioinformatic data sources registry with concept lattices
N Messai, MD Devignes, A Napoli, M Smaïl-Tabbone
International Conference on Conceptual Structures, 323-336, 2005
Integrative relational machine-learning for understanding drug side-effect profiles
E Bresso, R Grisoni, G Marchetti, AS Karaboga, M Souchet, MD Devignes, ...
BMC bioinformatics 14 (1), 207, 2013
Ontology-guided data preparation for discovering genotype-phenotype relationships
A Coulet, M Smaïl-Tabbone, P Benlian, A Napoli, MD Devignes
BMC bioinformatics 9 (S4), S3, 2008
Spatial clustering of protein binding sites for template based protein docking
AW Ghoorah, MD Devignes, M Smaïl-Tabbone, DW Ritchie
Bioinformatics 27 (20), 2820-2827, 2011
Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing
A Coulet, M Smaïl-Tabbone, A Napoli, MD Devignes
OTM Confederated International Conferences" On the Move to Meaningful …, 2006
Codon context effect in virus translational readthrough A study in vitro of the determinants of TMV and Mo‐MuLV amber suppression
RPC Valle, G Drugeon, MD Devignes-Morch, AB Legocki, AL Haenni
FEBS letters 306 (2-3), 133-139, 1992
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
The human semaphorin 6B gene is down regulated by PPARs
P Collet, L Domenjoud, MD Devignes, H Murad, H Schohn, M Dauça
Genomics 83 (6), 1141-1150, 2004
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