Matt Settles
Matt Settles
Director, Genome Center Bioinformatics Core, UC Davis
Verified email at ucdavis.edu - Homepage
TitleCited byYear
Epigenetic transgenerational actions of vinclozolin on promoter regions of the sperm epigenome
C Guerrero-Bosagna, M Settles, B Lucker, MK Skinner
PLoS One 5 (9), e13100, 2010
3522010
Epigenetic transgenerational inheritance of vinclozolin induced mouse adult onset disease and associated sperm epigenome biomarkers
C Guerrero-Bosagna, TR Covert, MM Haque, M Settles, EE Nilsson, ...
Reproductive toxicology 34 (4), 694-707, 2012
1742012
Breeding swarms: a GA/PSO hybrid
M Settles, T Soule
Proceedings of the 7th annual conference on Genetic and evolutionary …, 2005
1372005
Microbiota of the seminal fluid from healthy and infertile men
D Hou, X Zhou, X Zhong, ML Settles, J Herring, L Wang, Z Abdo, ...
Fertility and sterility 100 (5), 1261-1269. e3, 2013
1042013
A whole genome association analysis identifies loci associated with Mycobacterium avium subsp. paratuberculosis infection status in US holstein cattle
M Settles, R Zanella, SD McKay, RD Schnabel, JF Taylor, R Whitlock, ...
Animal genetics 40 (5), 655-662, 2009
1002009
Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio)
RE Drew, KJ Rodnick, M Settles, J Wacyk, E Churchill, MS Powell, ...
Physiological genomics 35 (3), 283-295, 2008
982008
Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus
EB Rosenblum, TJ Poorten, M Settles, GK Murdoch, J Robert, N Maddox, ...
PloS one 4 (8), e6494, 2009
952009
An Introduction to Particle Swarm Optimization
M Settles
Department of Computer Science, University of Idaho, 2005
902005
A forward genetic screen reveals that calcium-dependent protein kinase 3 regulates egress in Toxoplasma
E Garrison, M Treeck, E Ehret, H Butz, T Garbuz, BP Oswald, M Settles, ...
PLoS pathogens 8 (11), 2012
892012
Transcriptome analysis of high‐temperature adult‐plant resistance conditioned by Yr39 during the wheat–Puccinia striiformis f. sp. tritici interaction
TE CORAM, ML SETTLES, X Chen
Molecular plant pathology 9 (4), 479-493, 2008
742008
Prenatal exposure to BPA alters the epigenome of the rat mammary gland and increases the propensity to neoplastic development
E Dhimolea, PR Wadia, TJ Murray, ML Settles, JD Treitman, ...
PloS one 9 (7), 2014
722014
Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species
EB ROSENBLUM, TJ POORTEN, M SETTLES, GK MURDOCH
Molecular Ecology, 2012
682012
Vaginal microbiota of adolescent girls prior to the onset of menarche resemble those of reproductive-age women
RJ Hickey, X Zhou, ML Settles, J Erb, K Malone, MA Hansmann, ML Shew, ...
MBio 6 (2), e00097-15, 2015
662015
Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio)
BD Robison, RE Drew, GK Murdoch, M Powell, KJ Rodnick, M Settles, ...
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 3 (2 …, 2008
652008
Comparison of genetic algorithm and particle swarm optimizer when evolving a recurrent neural network
M Settles, B Rodebaugh, T Soule
Genetic and Evolutionary Computation—GECCO 2003, 200-200, 2003
652003
Neural network learning using particle swarm optimizers
M Settles, B Rylander
Advances in information science and soft computing, 224-226, 2002
65*2002
Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance
W Loftie-Eaton, H Yano, S Burleigh, RS Simmons, JM Hughes, ...
Molecular biology and evolution 33 (4), 885-897, 2016
532016
A phylogenomic approach based on PCR target enrichment and high throughput sequencing: Resolving the diversity within the South American species of Bartsia L.(Orobanchaceae)
S Uribe-Convers, ML Settles, DC Tank
PLoS One 11 (2), 2016
502016
Identification of loci associated with tolerance to Johne’s disease in Holstein cattle
R Zanella, ML Settles, SD McKay, R Schnabel, J Taylor, RH Whitlock, ...
Animal Genetics 42 (1), 28-38, 2011
492011
Meta-analysis of two genome-wide association studies of bovine paratuberculosis
G Minozzi, JL Williams, A Stella, F Strozzi, M Luini, ML Settles, JF Taylor, ...
PLoS one 7 (3), 2012
482012
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Articles 1–20