| Computer vision for pattern detection in chromosome contact maps C Matthey-Doret, L Baudry, A Breuer, R Montagne, N Guiglielmoni, ... Nature communications 11 (1), 5795, 2020 | 107 | 2020 |
| cis-acting complex-trait-associated lincRNA expression correlates with modulation of chromosomal architecture JY Tan, AAT Smith, MF da Silva, C Matthey-Doret, R Rueedi, R Sönmez, ... Cell reports 18 (9), 2280-2288, 2017 | 79 | 2017 |
| Evolution and comparative ecology of parthenogenesis in haplodiploid arthropods CJ van der Kooi, C Matthey-Doret, T Schwander Evolution letters 1 (6), 304-316, 2017 | 63 | 2017 |
| Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization C Matthey-Doret, MJ Colp, P Escoll, A Thierry, P Moreau, B Curtis, T Sahr, ... Genome Research 32 (9), 1698-1710, 2022 | 31 | 2022 |
| hicstuff: Simple library/pipeline to generate and handle Hi-C data C Matthey-Doret, L Baudry, A Bignaud, A Cournac, R Montagne, ... Zenodo. http://doi. org/10.5281/zenodo 4066363, 2020 | 15 | 2020 |
| Mapping of multiple complementary sex determination loci in a parasitoid wasp C Matthey-Doret, CJ Van Der Kooi, DL Jeffries, J Bast, AB Dennis, ... Genome biology and evolution 11 (10), 2954-2962, 2019 | 13 | 2019 |
| Orchestrating chromosome conformation capture analysis with Bioconductor J Serizay, C Matthey-Doret, A Bignaud, L Baudry, R Koszul Nature Communications 15 (1), 1072, 2024 | 10 | 2024 |
| Normalization of chromosome contact maps: Matrix balancing and visualization C Matthey-Doret, L Baudry, S Mortaza, P Moreau, R Koszul, A Cournac Hi-C Data Analysis: methods and protocols, 1-15, 2022 | 9 | 2022 |
| koszullab/hicstuff: Use miniconda layer for docker and improved P (s) normalisation C Matthey-Doret, L Baudry, A Bignaud, A Cournac, R Montagne, ... Zenodo, 2020 | 6 | 2020 |
| Evolution and comparative ecology of parthenogenesis in haplodiploid arthropods. Evolution Letters 1, 304–316 CJ van der Kooi, C Matthey-Doret, T Schwander | 6 | 2017 |
| Chromosight: A computer vision program for pattern detection in chromosome contact maps C Matthey-Doret, L Baudry, A Breuer, R Montagne, N Guiglielmoni, ... BioRxiv, 2020.03. 08.981910, 2020 | 4 | 2020 |
| Computer vision for pattern detection in chromosome contact maps. Nat. Commun. 11, 5795 C Matthey-Doret, L Baudry, A Breuer, R Montagne, N Guiglielmoni, ... | 4 | 2020 |
| Exploring the genomic complexity of bacterial infection in 3D C Matthey-Doret Sorbonne Université, 2021 | | 2021 |
