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Mark J. Williamson
Mark J. Williamson
Vernalis Research
Verified email at mjw.name
Title
Cited by
Cited by
Year
Routine microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized Born
AW Götz, MJ Williamson, D Xu, D Poole, S Le Grand, RC Walker
Journal of chemical theory and computation 8 (5), 1542-1555, 2012
8252012
Recent developments in the PySCF program package
Q Sun, X Zhang, S Banerjee, P Bao, M Barbry, NS Blunt, NA Bogdanov, ...
The Journal of chemical physics 153 (2), 2020
5752020
NWChem: Past, present, and future
E Aprà, EJ Bylaska, WA de Jong, N Govind, K Kowalski, TP Straatsma, ...
The Journal of Chemical Physics 152 (18), 184102, 2020
5282020
Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms
J Kirchmair, MJ Williamson, JD Tyzack, L Tan, PJ Bond, A Bender, ...
Journal of chemical information and modeling 52 (3), 617-648, 2012
3052012
NWChem
E Apra, EJ Bylaska, WA de Jong, N Govind, K Kowalski, TP Straatsma, ...
American Institute of Physics, 2020
1872020
CHAMBER: Comprehensive support for CHARMM force fields within the AMBER software
MF Crowley, MJ Williamson, RC Walker
International Journal of Quantum Chemistry 109 (15), 3767-3772, 2009
1042009
Chemical markup, XML, and the World Wide Web. 5. Applications of chemical metadata in RSS aggregators
P Murray-Rust, HS Rzepa, MJ Williamson, EL Willighagen
Journal of chemical information and computer sciences 44 (2), 462-469, 2004
702004
FAst MEtabolizer (FAME): A Rapid and Accurate Predictor of Sites of Metabolism in Multiple Species by Endogenous Enzymes
J Kirchmair, MJ Williamson, AM Afzal, JD Tyzack, APK Choy, A Howlett, ...
Journal of chemical information and modeling 53 (11), 2896-2907, 2013
622013
Prediction of Cytochrome P450 Xenobiotic Metabolism: Tethered Docking and Reactivity Derived from Ligand Molecular Orbital Analysis
JD Tyzack, MJ Williamson, R Torella, RC Glen
Journal of Chemical Information and Modeling, 2013
462013
How Do Metabolites Differ from Their Parent Molecules and How Are They Excreted?
J Kirchmair, A Howlett, JE Peironcely, DS Murrell, MJ Williamson, ...
Journal of chemical information and modeling 53 (2), 354-367, 2013
432013
Advancements in molecular dynamics simulations of biomolecules on graphical processing units
D Xu, MJ Williamson, RC Walker
Annual Reports in Computational Chemistry 6, 2-19, 2010
432010
Functional group interaction profiles: a general treatment of solvent effects on non-covalent interactions
MD Driver, MJ Williamson, JL Cook, CA Hunter
Chemical Science 11 (17), 4456-4466, 2020
382020
Cytochrome P450 site of metabolism prediction from 2D topological fingerprints using GPU accelerated probabilistic classifiers
JD Tyzack, HY Mussa, MJ Williamson, J Kirchmair, RC Glen
Journal of cheminformatics 6, 1-14, 2014
362014
A Surface Site Interaction Point Method for Dissipative Particle Dynamics Parametrization: Application to Alkyl Ethoxylate Surfactant Self-Assembly.
E Lavagnini, JL Cook, PB Warren, M Williamson, C Hunter
J. Phys. Chem. B, 2020
322020
Modes of action of the archaeal Mre11/Rad50 DNA-repair complex revealed by fast-scan atomic force microscopy
E Zabolotnaya, I Mela, MJ Williamson, SM Bray, SK Yau, D Papatziamou, ...
Proceedings of the National Academy of Sciences 117 (26), 14936-14947, 2020
212020
Molecular mechanism of a specific capsid binder resistance caused by mutations outside the binding pocket
MS Heike Brauna, Johannes Kirchmairc, Mark J. Williamson, Vadim A. Makarov ...
Antiviral Research 123, 138–145, 2015
182015
SSIPTools: Software and Methodology for Surface Site Interaction Point (SSIP) Approach and Applications
MD Driver, MJ Williamson, N De Mitri, T Nikolov, CA Hunter
Journal of chemical information and modeling 61 (11), 5331-5335, 2021
82021
ChemSem: An extensible and scalable RSS-based seminar alerting system for scientific collaboration
HS Rzepa, A Wheat, MJ Williamson
Journal of chemical information and modeling 46 (3), 985-990, 2006
82006
Chemstock: A Web-based Chemical Inventory system built from OpenSource Software Components
HS Rzepa, MJ Williamson
Internet J. Chem 5, 2002
22002
Computational free energy methods for ascertaining ligand interaction with metabolizing enzymes
MJ Williamson
Drug metabolism prediction 45, 179-198, 2014
12014
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Articles 1–20