Szymon Stoma
TitleCited byYear
Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development
S Stoma, M Lucas, J Chopard, M Schaedel, J Traas, C Godin
PLoS computational biology 4 (10), e1000207, 2008
1562008
Modeling dynamics of cell-to-cell variability in TRAIL-induced apoptosis explains fractional killing and predicts reversible resistance
F Bertaux, S Stoma, D Drasdo, G Batt
PLoS computational biology 10 (10), e1003893, 2014
402014
Hypoxia induces a HIF-1-dependent transition from collective-to-amoeboid dissemination in epithelial cancer cells
S Lehmann, V te Boekhorst, J Odenthal, R Bianchi, S van Helvert, ...
Current Biology 27 (3), 392-400, 2017
362017
Bridging the gaps in systems biology
M Cvijovic, J Almquist, J Hagmar, S Hohmann, HM Kaltenbach, E Klipp, ...
Molecular Genetics and Genomics 289 (5), 727-734, 2014
332014
In vivo fluorescence imaging of the activity of CEA TCB, a novel T-cell bispecific antibody, reveals highly specific tumor targeting and fast induction of T-cell–mediated tumor …
S Lehmann, R Perera, HP Grimm, J Sam, S Colombetti, T Fauti, L Fahrni, ...
Clinical Cancer Research 22 (17), 4417-4427, 2016
282016
STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification
S Stoma, A Donzé, F Bertaux, O Maler, G Batt
PLoS computational biology 9 (5), e1003056, 2013
252013
VEGF-A regulates cellular localization of SR-BI as well as transendothelial transport of HDL but not LDL
S Velagapudi, M Yalcinkaya, A Piemontese, R Meier, SF Nørrelykke, ...
Arteriosclerosis, thrombosis, and vascular biology 37 (5), 794-803, 2017
202017
Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform
C Versari, S Stoma, K Batmanov, A Llamosi, F Mroz, A Kaczmarek, ...
Journal of The Royal Society Interface 14 (127), 20160705, 2017
152017
Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy
A Gomariz, PM Helbling, S Isringhausen, U Suessbier, A Becker, A Boss, ...
Nature communications 9 (1), 2532, 2018
132018
Using mechanics in the modelling of meristem morphogenesis
S Stoma, J Chopard, C Godin, J Traas
102007
AutoTube: a novel software for the automated morphometric analysis of vascular networks in tissues
JA Montoya-Zegarra, E Russo, P Runge, M Jadhav, AH Willrodt, S Stoma, ...
Angiogenesis 22 (2), 223-236, 2019
92019
STSE: Spatio-temporal simulation environment dedicated to biology
S Stoma, M Fröhlich, S Gerber, E Klipp
BMC bioinformatics 12 (1), 126, 2011
82011
Integrating adaptation mechanisms using control theory centric architecture models: A case study
F Křikava, P Collet, R Rouvoy
11th International Conference on Autonomic Computing ({ICAC} 14), 25-32, 2014
62014
Defining modeling strategies for Systems Biology
J Stelling, P Mendes, F Tonin, E Klipp, R Zecchina, M Heinemann, ...
Report, FutureSysBio Workshop, Göteborg, Sweden, 2011
42011
OpenAlea: An open-source platform for the integration of heterogeneous FSPM components
S Dufour-Kowalski, C Pradal, N Dones, PB de Reuille, F Boudon, ...
22007
Spatial analysis of the bone marrow stroma using deep learning
A Gomariz, S Isringhausen, P Helbling, U Suessbier, A Becker, A Boss, ...
SWISS MEDICAL WEEKLY 148, 25S-25S, 2018
2018
Multiscale image-based quantitative analysis of bone marrow stromal network topology reveals strict spatial constraints for hematopoietic-stromal cellular interactions
A Gomariz, P Helbling, S Isringhausen, U Suessbier, A Becker, A Boss, ...
HAEMATOLOGICA 102, 78-79, 2017
2017
A Software Tool for Automated Analysis of in vitro Lymphatic Endothelial Cell Tube Formation
P Runge, J Montoya, P Schineis, S Stoma, S Noerrelykke, M Detmar, ...
JOURNAL OF VASCULAR RESEARCH 54, 49-50, 2017
2017
Spatio-Temporal Simulation Environment: A Microscopy Image Based Modelization Framework
S Stoma, E Klipp
Microscopy and Microanalysis 16 (S2), 734-735, 2010
2010
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Articles 1–19