yishai shimoni
yishai shimoni
Research Scientist, IBM Research Labs, Haifa, Israel
Verified email at il.ibm.com
Title
Cited by
Cited by
Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
17952014
A promoter-level mammalian expression atlas
Fantom Consortium
Nature 507 (7493), 462, 2014
11752014
Regulation of gene expression by small non‐coding RNAs: a quantitative view
Y Shimoni, G Friedlander, G Hetzroni, G Niv, S Altuvia, O Biham, ...
Molecular systems biology 3 (1), 138, 2007
3292007
Elucidating compound mechanism of action by network perturbation analysis
JH Woo, Y Shimoni, WS Yang, P Subramaniam, A Iyer, P Nicoletti, ...
Cell 162 (2), 441-451, 2015
1832015
Improving breast cancer survival analysis through competition-based multidimensional modeling
E Bilal, J Dutkowski, J Guinney, IS Jang, BA Logsdon, G Pandey, ...
PLoS Comput Biol 9 (5), e1003047, 2013
842013
Characterization of pure quantum states of multiple qubits using the Groverian entanglement measure
Y Shimoni, D Shapira, O Biham
Physical Review A 69 (6), 062303, 2004
582004
Stochastic analysis of the SOS response in Escherichia coli
Y Shimoni, S Altuvia, H Margalit, O Biham
PloS one 4 (5), e5363, 2009
512009
Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells
J Hu, G Nudelman, Y Shimoni, M Kumar, Y Ding, C López, F Hayot, ...
PLoS One 6 (2), e16614, 2011
352011
Entangled quantum states generated by Shor’s factoring algorithm
Y Shimoni, D Shapira, O Biham
Physical Review A 72 (6), 062308, 2005
352005
Groverian measure of entanglement for mixed states
D Shapira, Y Shimoni, O Biham
Physical Review A 73 (4), 044301, 2006
312006
Benchmarking framework for performance-evaluation of causal inference analysis
Y Shimoni, C Yanover, E Karavani, Y Goldschmnidt
arXiv preprint arXiv:1802.05046, 2018
182018
Formation of multipartite entanglement using random quantum gates
Y Most, Y Shimoni, O Biham
Physical Review A 76 (2), 022328, 2007
182007
Analysis of Grover’s quantum search algorithm as a dynamical system
O Biham, D Shapira, Y Shimoni
Physical Review A 68 (2), 022326, 2003
162003
Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation
Y Shimoni, G Nudelman, F Hayot, SC Sealfon
PloS one 6 (12), e29298, 2011
152011
Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification
Y Shimoni
PLoS computational biology 14 (2), e1006026, 2018
132018
Groverian entanglement measure of pure quantum states with arbitrary partitions
Y Shimoni, O Biham
Physical Review A 75 (2), 022308, 2007
122007
Plato's cave algorithm: inferring functional signaling networks from early gene expression shadows
Y Shimoni, MY Fink, S Choi, SC Sealfon
PLoS Comput Biol 6 (6), e1000828, 2010
112010
Entanglement of periodic states, the quantum Fourier transform, and Shor’s factoring algorithm
Y Most, Y Shimoni, O Biham
Physical Review A 81 (5), 052306, 2010
112010
Algebraic analysis of quantum search with pure and mixed states
D Shapira, Y Shimoni, O Biham
Physical Review A 71 (4), 042320, 2005
102005
Stochastic analysis of bistability in coherent mixed feedback loops combining transcriptional and posttranscriptional regulations
M Nitzan, Y Shimoni, O Rosolio, H Margalit, O Biham
PHYSICAL REVIEW E 91 (5), 052706, 2015
82015
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Articles 1–20