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Mikhail Pachkov
Mikhail Pachkov
University of Basel, Swiss Institute of Bioinformatics
Verified email at unibas.ch
Title
Cited by
Cited by
Year
Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming
N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ...
Cancer cell 23 (6), 768-783, 2013
4942013
Automated reconstruction of whole-genome phylogenies from short-sequence reads
F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen
Molecular biology and evolution 31 (5), 1077-1088, 2014
4592014
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Nature genetics 41 (5), 553-562, 2009
4192009
Adipose tissue microRNAs as regulators of CCL2 production in human obesity
E Arner, N Mejhert, A Kulyté, PJ Balwierz, M Pachkov, M Cormont, ...
Diabetes 61 (8), 1986-1993, 2012
3292012
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ...
Genome research 24 (5), 869-884, 2014
3092014
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop
N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ...
Nature medicine 18 (4), 529-537, 2012
3042012
Gas-phase electronic transitions of carbon chain anions coinciding with diffuse interstellar bands
M Tulej, DA Kirkwood, M Pachkov, JP Maier
The Astrophysical Journal 506 (1), L69, 1998
2031998
Klf4 is a transcriptional regulator of genes critical for EMT, including Jnk1 (Mapk8)
N Tiwari, N Meyer-Schaller, P Arnold, H Antoniadis, M Pachkov, ...
PloS one 8 (2), e57329, 2013
1882013
SwissRegulon: a database of genome-wide annotations of regulatory sites
M Pachkov, I Erb, N Molina, E Van Nimwegen
Nucleic acids research 35 (suppl_1), D127-D131, 2007
1602007
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
M Pachkov, PJ Balwierz, P Arnold, E Ozonov, E Van Nimwegen
Nucleic acids research 41 (D1), D214-D220, 2012
1512012
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
P Arnold, A Schöler, M Pachkov, PJ Balwierz, H Jørgensen, MB Stadler, ...
Genome research 23 (1), 60-73, 2013
1382013
MicroRNA-221–222 regulate the cell cycle in mast cells
RJ Mayoral, ME Pipkin, M Pachkov, E van Nimwegen, A Rao, S Monticelli
The Journal of Immunology 182 (1), 433-445, 2009
1192009
MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences
P Arnold, I Erb, M Pachkov, N Molina, E van Nimwegen
Bioinformatics 28 (4), 487-494, 2012
1092012
Photodetachment Spectrum of l-C3H2-: The Role of Dipole Bound States for Electron Attachment in Interstellar Clouds
F Güthe, M Tulej, MV Pachkov, JP Maier
The Astrophysical Journal 555 (1), 466, 2001
702001
Photodetachment spectroscopy of the anions in the vicinity of their electron detachment threshold
T Pino, M Tulej, F Güthe, M Pachkov, JP Maier
The Journal of chemical physics 116 (14), 6126-6131, 2002
582002
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
512016
Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways
AJ Gruber, WA Grandy, PJ Balwierz, YA Dimitrova, M Pachkov, C Ciaudo, ...
Nucleic acids research 42 (14), 9313-9326, 2014
492014
Electronic spectroscopy of carbon chains and relevance to astrophysics
DA Kirkwood, JP Maier
Faraday Discussions 109, 109-119, 1998
471998
Sodium-coupled hexose transport
B Sacktor
Kidney international 36 (3), 342-350, 1989
411989
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ...
Nature genetics 54 (7), 1037-1050, 2022
342022
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