| Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ... Cancer cell 23 (6), 768-783, 2013 | 514 | 2013 |
| Automated reconstruction of whole-genome phylogenies from short-sequence reads F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014 | 485 | 2014 |
| The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009 | 431 | 2009 |
| Adipose tissue microRNAs as regulators of CCL2 production in human obesity E Arner, N Mejhert, A Kulyté, PJ Balwierz, M Pachkov, M Cormont, ... Diabetes 61 (8), 1986-1993, 2012 | 351 | 2012 |
| ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ... Genome research 24 (5), 869-884, 2014 | 334 | 2014 |
| Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ... Nature medicine 18 (4), 529-537, 2012 | 317 | 2012 |
| Gas-phase electronic transitions of carbon chain anions coinciding with diffuse interstellar bands M Tulej, DA Kirkwood, M Pachkov, JP Maier The Astrophysical Journal 506 (1), L69, 1998 | 209 | 1998 |
| Klf4 is a transcriptional regulator of genes critical for EMT, including Jnk1 (Mapk8) N Tiwari, N Meyer-Schaller, P Arnold, H Antoniadis, M Pachkov, ... PloS one 8 (2), e57329, 2013 | 197 | 2013 |
| SwissRegulon: a database of genome-wide annotations of regulatory sites M Pachkov, I Erb, N Molina, E Van Nimwegen Nucleic acids research 35 (suppl_1), D127-D131, 2007 | 164 | 2007 |
| SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates M Pachkov, PJ Balwierz, P Arnold, E Ozonov, E Van Nimwegen Nucleic acids research 41 (D1), D214-D220, 2012 | 160 | 2012 |
| Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting P Arnold, A Schöler, M Pachkov, PJ Balwierz, H Jørgensen, MB Stadler, ... Genome research 23 (1), 60-73, 2013 | 142 | 2013 |
| MicroRNA-221–222 regulate the cell cycle in mast cells RJ Mayoral, ME Pipkin, M Pachkov, E van Nimwegen, A Rao, S Monticelli The Journal of Immunology 182 (1), 433-445, 2009 | 121 | 2009 |
| MotEvo: integrated Bayesian probabilistic methods for inferring regulatory sites and motifs on multiple alignments of DNA sequences P Arnold, I Erb, M Pachkov, N Molina, E van Nimwegen Bioinformatics 28 (4), 487-494, 2012 | 114 | 2012 |
| Photodetachment Spectrum ofl-C3H2-: The Role of Dipole Bound States for Electron Attachment in InterstellarClouds F Güthe, M Tulej, MV Pachkov, JP Maier The Astrophysical Journal 555 (1), 466, 2001 | 76 | 2001 |
| Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder, AK Mukarram, ... Nature genetics 54 (7), 1037-1050, 2022 | 60 | 2022 |
| Photodetachment spectroscopy of the anions in the vicinity of their electron detachment threshold T Pino, M Tulej, F Güthe, M Pachkov, JP Maier The Journal of chemical physics 116 (14), 6126-6131, 2002 | 59 | 2002 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 52 | 2016 |
| Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways AJ Gruber, WA Grandy, PJ Balwierz, YA Dimitrova, M Pachkov, C Ciaudo, ... Nucleic acids research 42 (14), 9313-9326, 2014 | 50 | 2014 |
| Electronic spectroscopy of carbon chains and relevance to astrophysics DA Kirkwood, JP Maier Faraday Discussions 109, 109-119, 1998 | 47 | 1998 |
| Sodium-coupled hexose transport B Sacktor Kidney international 36 (3), 342-350, 1989 | 42 | 1989 |
