| Deciphering tissue structure and function using spatial transcriptomics BL Walker, Z Cang, H Ren, E Bourgain-Chang, Q Nie Communications biology 5 (1), 220, 2022 | 53 | 2022 |
| Identifying multicellular spatiotemporal organization of cells with SpaceFlow H Ren, BL Walker, Z Cang, Q Nie Nature communications 13 (1), 4076, 2022 | 40 | 2022 |
| Transient crosslinking kinetics optimize gene cluster interactions B Walker, D Taylor, J Lawrimore, C Hult, D Adalsteinsson, K Bloom, ... PLoS computational biology 15 (8), e1007124, 2019 | 13 | 2019 |
| Numerical computation of effective thermal equilibria in stochastically switching Langevin systems BL Walker, KA Newhall Physical Review E 105 (6), 064113, 2022 | 8 | 2022 |
| Inferring information flow in spike-train data sets using a trial-shuffle method BL Walker, KA Newhall Plos one 13 (11), e0206977, 2018 | 8 | 2018 |
| AI-assisted forward modeling of biological structures J Lawrimore, A Doshi, B Walker, K Bloom Frontiers in Cell and Developmental Biology 7, 279, 2019 | 7 | 2019 |
| Multilayer Modularity Belief Propagation to Assess Detectability of Community Structure WH Weir, B Walker, L Zdeborova, PJ Mucha SIAM Journal on Mathematics of Data Science 2 (3), 872-900, 2020 | 3 | 2020 |
| Theoretical Foundations of Deep Selective State-Space Models NM Cirone, A Orvieto, B Walker, C Salvi, T Lyons arXiv preprint arXiv:2402.19047, 2024 | 2 | 2024 |
| Polymer Modeling Reveals Interplay between Physical Properties of Chromosomal DNA and the Size and Distribution of Condensin-Based Chromatin Loops D Kolbin, BL Walker, C Hult, JD Stanton, D Adalsteinsson, MG Forest, ... Genes 14 (12), 2193, 2023 | 2 | 2023 |
| NeST: nested hierarchical structure identification in spatial transcriptomic data BL Walker, Q Nie Nature Communications 14 (1), 6554, 2023 | 2 | 2023 |
| Learning dynamic graph embeddings with neural controlled differential equations T Qin, B Walker, T Lyons, H Yan, H Li arXiv preprint arXiv:2302.11354, 2023 | 2 | 2023 |
| Log Neural Controlled Differential Equations: The Lie Brackets Make a Difference B Walker, AD McLeod, T Qin, Y Cheng, H Li, T Lyons arXiv preprint arXiv:2402.18512, 2024 | 1 | 2024 |
| Simulating Dynamic Chromosome Compaction: Methods for Bridging In Silico to In Vivo Y He, D Adalsteinsson, B Walker, J Lawrimore, MG Forest, K Bloom Mitosis: Methods and Protocols, 211-220, 2022 | 1 | 2022 |
| Theoretical Foundations of Deep Selective State-Space Models N Muca Cirone, A Orvieto, B Walker, C Salvi, T Lyons arXiv e-prints, arXiv: 2402.19047, 2024 | | 2024 |
| Different relative scalings between transient forces and thermal fluctuations tune regimes of chromatin organization A Coletti, B Walker, K Bloom, K Newhall arXiv preprint arXiv:2401.06921, 2024 | | 2024 |
| ScoEHR: Generating Synthetic Electronic Health Records using Continuous-time Diffusion Models AA Naseer, B Walker, C Landon, A Ambrosy, M Fudim, N Wysham, B Toro, ... Machine Learning for Healthcare Conference, 489-508, 2023 | | 2023 |
| Interruption of the Intratumor CD8: Treg Crosstalk Improves the Efficacy of PD-1 Immunotherapy SN Geels, A Moshensky, RS Sousa, BL Walker, R Singh, G Gutierrez, ... bioRxiv, 2023 | | 2023 |
| Unbiased Decisions Reduce Regret: Adversarial Optimism for the Bank Loan Problem E Gal, S Singh, A Pacchiano, B Walker, T Lyons, JN Foerster | | 2022 |
| Emergent Structure and Dynamics from Stochastic Pairwise Crosslinking in Chromosomal Polymer Models BL Walker The University of North Carolina at Chapel Hill, 2021 | | 2021 |
